Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0854 ATGACCGATGGAGAGACGGCTCGCGAGGACTCTCCCGATCCGCTACATGAATTTGTGCCCTTCCAGGGTCAGAAATCGGATGATTCCCCATTGTCTCAATACTCCTCCTGTGGAGAATCTGAGTTCGATAGGTATTGTAGCGCGAACTCGGTCATGGGTACGCCCAGTATGTGTAGTAGTTCCTTTGGGACTTTTAATGAGTGTATCGATTCTGAATTAGGGTTTATGTGGAGTTCTGGGCTTGGGGAGGATGGTAGTTTGGAGAATTTTAGCTTGGGAGGAGGTTTTGATAGTAACTGTGAAAACCACGGGAGAATTGCATTTTTGGGTGGGTCAGATATCTGTAGAAATGATCATGGAATTGAAAATCGTGAAGCACAGAGCGATGGTGAGAGAACGATAAAGAATGGGTCAAAATTACGAGATGGCGAGGAGGGTTCTAGCAGTCAAATGGCATCTTTGAGGGTGGAGAGTGGGTGTGGGGATAAGGGGTCATTGCTAAGCGGTCTGGGAAATGAATGCCACAAAGAGAATGCTAATGCAAAATTTGTTGAGGATGCCATGTTTAATGATGGGATTGCTGAAGAAGATTCATCATCTCACGTGGTTAATGAAGTCGACAGATACTTTTATGGGTTAAATTTGCAATCTAATTTTCAGTTTGAGGAGAGGGAGGATGGGAATTGCTGTGAGGAAGATGGAACCTCATCCAGATATGAACATTCAGAAGATGAGGATTCAATGTATAAGTATGGGACAGATGATGAACTTAAGACAGATTTGAATCGTGGGAAGAATGTGCAATATCGTCAAGAAGAAAAAGCTGAGAATGGGAACCCATTGCTTATGAACTCATCCCTAGCCTTTGGTTCAGAAGATTGGGATGATTTTGTCCAAGAAACAGGGGAAAGTGCTTTTCCTTCTTTGATGTTGGATAAATTTCAGGAGCAGAAGGAACAGAATCTCAAAGCTGAAAAAATGCTGCCAAATTCAAGTTACGTGACACCAATTGGGCTTCAAAGTATCAGTGAGACAACAGAAGGAGAAAATGTTTTGGATGTGCCCAAAGCCATAAAACAAGTTCACAATCTTGATGAATCAGAAGAGTGTATCAAACGTTGTTCTTTGGTCCCAATTAGTACTGGGGGGTCAGAGCAAGAAGAAGATGTGAAAGACATTTATGTGACCATTAATCAAGTCCAAGTTACTGATGAATCAGCTGAGTACCTTAAAAACAGTTCTGCAGTTTTCAATGCCTTAAGGAATCTTGGTAAGTCAGAGGAAGGAGAAGCTGTTAGAGATATTTGTGAAACCAATAATCAGATTCTAATTCAAGGTGCTGATGGATCAGAAGAGTATCTTCAAAGTTGCTCTGTTAACAATATCTTTGAAACAGAGCAGGACCCGCTAGCAGAAAAGGCCACTTTGAGGATAGGATTGAACACTAGCAATGGTATCATGCAAAGGGAGCAGCAACATGGAAACACCTCAGAAGTTCTTGACCTTGGTGACAGACAAGTCTCAGATAGTCCAGAATTGGGGAAACCAAAAGTACAATTGGATCCACTTTCTTATAATACTGTTGATCAAGTTTATGCTCCTTCAACTGAAGCGCTAGAAAATAGACAAGCAGGATTCTTCAAAGGCTACAAACCAGATCCACACACATCAATGCTTGAGAATGATATGTGGAATGAATCAAAGGATTCTCCTGTTTCATCAGATCCCTTTGAAGGTCATTCTGCACCAGTTAAGATGGAGAATATTGAATTAAAAGAATCCTATGATGAAGTTGTCCTTGACATGGAGGAAATTCTGCTCGAGTCTAGTGAGTCTCCTGGGGCTAGATTCACTCAAGGCAATAGGACATTCCAATCCCATCTACCTTTGCCTTTAAGAGATGGTGGTTCTACTGCTTCTACTTCCGGTACAGATGATGTTTACCCACCACTTCGACAGCTACAGAACATTGATGGGGTTGAAGTGATTGGTGCAAAGCAAAAGAAGGGAGATGTCTCACTTGGTGAAAGACTGGTTGGAGTTAAGGAATACACTGTTTATAAAATAAGAGTGTGGAGTGGCAATGACCAATGGGAGGTTGAACGTCGATACCGTGATTTCTTTACTCTTTATCGTCGGATGAAAACAGTATTTTCTGATCAAGGTTGGAATCTTCCTTCTCCTTGGTCCTCTGTTGAACGGGAATCCAGAAAGATTTTTGGAAATGCTTCTCCTGATGTCGTAGCAGAGAGAAGTGTTCTCATTCAAGAGTGTTTACGCTCCATTCTCCACTTTAGGTTTCTGTCCAGTCCTCCTAATGCTTTGATTTGGTTTCTGTCCCCCCAAAATGCTGTTCCTACTTCCTTTGCATCAAATACACTGATGCCTTCTTCTACATCCTTTAACAGAGGTGTGAATATTGAAAATGTTTCCGCTCTAGGGAAGACCATATCTCTTGTGGTAGAACTCCAACCATATAAATCCATGAAACAGATGCTAGAGGCACAACATTATACTTGTGCAGGATGCCACAAACATTTTGATGATGGCAAGACCCTCGTTCGGGAGTTTGTACAGACATTTGGGTGGGGCAAACCTCGGCTTTGTGAATACACTGGTCAATTGTTTTGTTCCATGTGCCATACGAATGATACTGCAGTCTTGCCAGCCAGAGTTTTACATCACTGGGATTTTACTGAATATCCAATTTCTCAATTGGCTAAATCATATCTGGATTCTATCCATGATCAGCCCATGCTTTGTGTCAGTGCTGTTAATCCTTTCCTATTCTCGAAGGTCCCAGCCTTGCTTCATGTTACAGGTGTCAGAAAGAAGATAGGAGCTATTCTTCCATACATTCGCTGTCCATTCCGTAGGTCTGTCAACAAAGGACTGGGGTCTCGACGATATCTTCTTGAAAGCAATGATTTTTTTGCACTTAGAGACCTTATTGATCTGTCCAAGGGGGCATTTTCAGCATTACCGGTGATGGTAGAAACCGTTTCAAGGAAAATATTGGAGCATATCACAGAGCAATGCCTCATATGCTGTGATGTTGGCGTCCCTTGTAATGGTCGGCAAGCCTGTAATGACCCGTCTTCTTTCATTTTCCCTTTTCAGGAAGGTGAGGTTGACAGATGTAAATCCTGTGAATTGGTTTTCCACAAATCTTGCTTCAGAAAGCTCACAAACTGTCCCTGCGGGGTGCAACTAAGGGCCGAGGAGGTCACAGGGCTCACCAAGAAGGCAAGTGGTCGGGGTGGGGGCAAGGAGGGCGAAGCTGTGGACTTGCTTGGGAGGAAGTTAAGTAGTACTGGTTTGGGTGGTGGATTCCTGACTGGACTATTTGCAAGGGCAAGGCAGGAAAAGGCATTGGACCATAAAGAAAGCGACAATGTCATCTTAATGGGTTCTTTACCTAGCACTTCTCTTTGA 3435 0.4282 MTDGETAREDSPDPLHEFVPFQGQKSDDSPLSQYSSCGESEFDRYCSANSVMGTPSMCSSSFGTFNECIDSELGFMWSSGLGEDGSLENFSLGGGFDSNCENHGRIAFLGGSDICRNDHGIENREAQSDGERTIKNGSKLRDGEEGSSSQMASLRVESGCGDKGSLLSGLGNECHKENANAKFVEDAMFNDGIAEEDSSSHVVNEVDRYFYGLNLQSNFQFEEREDGNCCEEDGTSSRYEHSEDEDSMYKYGTDDELKTDLNRGKNVQYRQEEKAENGNPLLMNSSLAFGSEDWDDFVQETGESAFPSLMLDKFQEQKEQNLKAEKMLPNSSYVTPIGLQSISETTEGENVLDVPKAIKQVHNLDESEECIKRCSLVPISTGGSEQEEDVKDIYVTINQVQVTDESAEYLKNSSAVFNALRNLGKSEEGEAVRDICETNNQILIQGADGSEEYLQSCSVNNIFETEQDPLAEKATLRIGLNTSNGIMQREQQHGNTSEVLDLGDRQVSDSPELGKPKVQLDPLSYNTVDQVYAPSTEALENRQAGFFKGYKPDPHTSMLENDMWNESKDSPVSSDPFEGHSAPVKMENIELKESYDEVVLDMEEILLESSESPGARFTQGNRTFQSHLPLPLRDGGSTASTSGTDDVYPPLRQLQNIDGVEVIGAKQKKGDVSLGERLVGVKEYTVYKIRVWSGNDQWEVERRYRDFFTLYRRMKTVFSDQGWNLPSPWSSVERESRKIFGNASPDVVAERSVLIQECLRSILHFRFLSSPPNALIWFLSPQNAVPTSFASNTLMPSSTSFNRGVNIENVSALGKTISLVVELQPYKSMKQMLEAQHYTCAGCHKHFDDGKTLVREFVQTFGWGKPRLCEYTGQLFCSMCHTNDTAVLPARVLHHWDFTEYPISQLAKSYLDSIHDQPMLCVSAVNPFLFSKVPALLHVTGVRKKIGAILPYIRCPFRRSVNKGLGSRRYLLESNDFFALRDLIDLSKGAFSALPVMVETVSRKILEHITEQCLICCDVGVPCNGRQACNDPSSFIFPFQEGEVDRCKSCELVFHKSCFRKLTNCPCGVQLRAEEVTGLTKKASGRGGGKEGEAVDLLGRKLSSTGLGGGFLTGLFARARQEKALDHKESDNVILMGSLPSTSL* 1145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0854 1144 MobiDBLite consensus disorder prediction 121 154 - -
Vvi17g0854 1144 MobiDBLite consensus disorder prediction 1 15 - -
Vvi17g0854 1144 ProSiteProfiles PX domain profile. 665 785 IPR001683 GO:0035091
Vvi17g0854 1144 CDD PX_domain 660 772 - -
Vvi17g0854 1144 MobiDBLite consensus disorder prediction 626 649 - -
Vvi17g0854 1144 MobiDBLite consensus disorder prediction 121 142 - -
Vvi17g0854 1144 MobiDBLite consensus disorder prediction 635 649 - -
Vvi17g0854 1144 SUPERFAMILY PX domain 679 783 IPR036871 GO:0035091
Vvi17g0854 1144 SMART DUF4206_2 867 1073 IPR025258 -
Vvi17g0854 1144 MobiDBLite consensus disorder prediction 224 250 - -
Vvi17g0854 1144 Pfam PX domain 692 781 IPR001683 GO:0035091
Vvi17g0854 1144 Gene3D - 671 778 IPR036871 GO:0035091
Vvi17g0854 1144 MobiDBLite consensus disorder prediction 1 33 - -
Vvi17g0854 1144 MobiDBLite consensus disorder prediction 230 250 - -
Vvi17g0854 1144 PANTHER PHOX (PX) DOMAIN-CONTAINING PROTEIN 231 1144 - -
Vvi17g0854 1144 Pfam Putative zinc-RING and/or ribbon 867 1070 IPR025258 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0854 Vvi-Chr17 9899584 9906303 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0854 - - vvi:100853506 2310.03