Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0845 ATGGCTTGTCTCAAAGAAGACCCTATTCTTCGAAGCAACGATATAAAGGAGGATAGTGAAGAGACGGAGCCTAAAGATAAGGTGAGAGAAGAGGGAGGAGTGAGAGAGATGGTTCTGCCGGCTGGAAATTCAATTCACCGGTCCGGTTCTCGGCCGCAGCTTGACCTTAGTGGTGCAGCCATTCAAGGGAACAATTTTGAGGAAAGGCATCCAACAATTCTCTTGCCCAATCAGTCTGATGATATATCTCATCTGGCTTTGGACATTGGAGGATCTCTCATTAAGTTGGTGTATTTTTCAAGACATGAAGACCGGTCAATTGATGATAAGAGGAAAAGGTCTATCAAGGAGAGATTGGGAGTTACAAATGGTAATAGGAGAAGCTACCCTATTCTTGGTGGAAGGCTCCATTTTGTGAAGTTTGAGACAAGCAAGATTAATGAATGCTTGGACTTCATTAATTCTAAGCAGCTTCATCGTGGCGGGATGGACTCACGCCTTTGGCTTTCTGAGGCCCCACCCAGTGATGATGTCATAATTAAGGCCACAGGTGGTGGAGCACACAAGTTTGCAGATCTCTTCAAAGAAAGGCTTGGGGTTAGTATTGACAAAGAAGATGAAATGGATTGTCTTGTGGCTGGAGCAAATTTTTTACTTAAGGCAATCCGTCATGAAGCTTTCACACACATGGAAGGTCATAAAGAGTTTGTGCAGATTGACCACAATGATCTATTCCCTTATCTTCTTGTTAACATTGGCTCTGGTGTTAGCATGATTAAGGTTGATGGGGATGGGAAGTTTCAGCGGGTTAGTGGGACAAATGTTGGTGGTGGTACTTATTGGGGCTTGGGAAGGCTATTAACAAAGTGTAAAAGTTTTGATGATTTGCTGGAACTAAGTCAACGAGGAGATAATAGGACCATTGACATGCTTGTTGGGGACATCTATGGTGGCATGGATTACTCAAAAATCGGTCTCTCTGCCTCGACCATTGCCTCTAGTTTTGGCAAGACAATTTCTGAAAACAAGGAGCTAGAAGACTACAGGCCTGAAGATATCTCCCTCTCCCTCTTGCGTATGATTTCATATAATATAGGGCAGATATCTTACTTGAATGCACTTCGGTTTGGGCTTAAGAGAATCTTTTTTGGAGGATTTTTCATAAGAGGTCATGCTTATACAATGGATACGATCTCCTTTGCTGTTCAGTTCTGGTCAAATGGGGATGCCCAGGCAATGTTTTTGCGGCATGAAGGATTCTTAGGAGCTTTAGGTGCATTCATGAGCTATGAGAAGCATGGTCTCGATGACTTGATGGTCCATCAGTTAGTTGAAAGGTTCCCAATGGGAGCACCATACATAGGAGGAAGGATTCATGGTCCACCACTTGGGGATTTGAATGAAAAGATTTCATGGATGGAAAAGTTTGTGCAGAAGGGAACTGAGATCACTGCTCCTGTACCAATGGCCCCATCTGGAACCACTGGCCTTGGAGGCTTTGAAGTTCCTTCATCAAAAGGAGACACCCTACGTTCTGATGCAAGTGCTTTAAATATTGGGGTGCTCCATCTTGTACCAACTTTGGAGGTCTTTCCATTATTAGCAGACCCAAAAATGTACGAGCCCAACACTATTGATCTTGCAGACCCCAGTGAACTGGAGTATTGGTTCACTGTGCTGTCAGAGCATTTGCCGGACCTTGTTGATAAGGCAGTGGCAAGTGAAGGTGGAACGGATGATGCTAAAAGAAGGGGTGATGCTTTTGCTCGTGCATTTTCTGCCCACCTGGCAAGATTGATGGAAGAGCCTGCTGCTTATGGAAAGTTGGGCCTGGCTAACCTTTTGGAACTAAGGGAAGAGTGCTTGAGAGAGTTCCATTTTGTTGACGCCTATAGAAGCATAAAACAAAGGGAAAATGAGGCTTCACTTGCTGTTTTGCCTGATCTTCTAATGGAGATTGATAGTATGAATGAGGAAACAAGGCTGCTTACCCTAATTGAAGGTGTTCTTGCTGCCAACATCTTTGACTGGGGATCCCGTGCCTGTGTGGATCTCTATCATAAAGGAACAATTATTGAAATTTATAGAATGAGTCGTAAAAAGATGCAAAGGCCTTGGCGGGTGGATGACTTTGACATCTTTGAGGAGAGAATGTTGGGGTCTGAAGACAAGAAGCCTCGCCCACATAAAAGGGCATTACTCTTTGTTGACAACTCAGGTGCTGATGTCATTCTAGGAATGCTTCCCCTAGCACGGGAACTTCTTAGACGTGGAACTGAGGTAGTATTGGTTGCAAACTCCCTTCCTGCACTAAATGATGTCACTGCAATGGAGCTTCCTGACATTGTGGCTGAGGCTGCCAAGCATTGTGACATTCTCCGTAGAGCTGCTGAAGCAGGAGGTCTACTTGTGGATGCAATGGTCAACATCCAAGACGGTTCTAAAGATAGTTTGTCTTCAGTTCCTTTGATGGTTGTTGAGAATGGGTGTGGAAGTCCTTGCATAGACTTAAGGCAGGTCAGCTCTGAGCTAGCTGCTGCAGCAAAAGAGGCTGATTTGATTATCTTGGAAGGGATGGGCCGAGCTCTTCATACCAACTTCAATGCTCGGTTTAAATGTGATGCTCTCAAGCTTGCAATGGTGAAGAATCAGAGGTTGGCAGAAAAATTGATCAAAGGAAACATTTATGACTGCGTTTGCCGATATGAACCAGCCCCTTGA 2721 0.4447 MACLKEDPILRSNDIKEDSEETEPKDKVREEGGVREMVLPAGNSIHRSGSRPQLDLSGAAIQGNNFEERHPTILLPNQSDDISHLALDIGGSLIKLVYFSRHEDRSIDDKRKRSIKERLGVTNGNRRSYPILGGRLHFVKFETSKINECLDFINSKQLHRGGMDSRLWLSEAPPSDDVIIKATGGGAHKFADLFKERLGVSIDKEDEMDCLVAGANFLLKAIRHEAFTHMEGHKEFVQIDHNDLFPYLLVNIGSGVSMIKVDGDGKFQRVSGTNVGGGTYWGLGRLLTKCKSFDDLLELSQRGDNRTIDMLVGDIYGGMDYSKIGLSASTIASSFGKTISENKELEDYRPEDISLSLLRMISYNIGQISYLNALRFGLKRIFFGGFFIRGHAYTMDTISFAVQFWSNGDAQAMFLRHEGFLGALGAFMSYEKHGLDDLMVHQLVERFPMGAPYIGGRIHGPPLGDLNEKISWMEKFVQKGTEITAPVPMAPSGTTGLGGFEVPSSKGDTLRSDASALNIGVLHLVPTLEVFPLLADPKMYEPNTIDLADPSELEYWFTVLSEHLPDLVDKAVASEGGTDDAKRRGDAFARAFSAHLARLMEEPAAYGKLGLANLLELREECLREFHFVDAYRSIKQRENEASLAVLPDLLMEIDSMNEETRLLTLIEGVLAANIFDWGSRACVDLYHKGTIIEIYRMSRKKMQRPWRVDDFDIFEERMLGSEDKKPRPHKRALLFVDNSGADVILGMLPLARELLRRGTEVVLVANSLPALNDVTAMELPDIVAEAAKHCDILRRAAEAGGLLVDAMVNIQDGSKDSLSSVPLMVVENGCGSPCIDLRQVSSELAAAAKEADLIILEGMGRALHTNFNARFKCDALKLAMVKNQRLAEKLIKGNIYDCVCRYEPAP* 907
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0845 906 SUPERFAMILY Actin-like ATPase domain 197 430 IPR043129 -
Vvi17g0845 906 Gene3D - 307 419 - -
Vvi17g0845 906 Gene3D - 76 238 - -
Vvi17g0845 906 Gene3D Uncharacterised protein PF01937, DUF89, domain 3 707 904 - -
Vvi17g0845 906 SUPERFAMILY AF1104-like 522 904 IPR036075 -
Vvi17g0845 906 FunFam Pantothenate kinase 2 542 628 - -
Vvi17g0845 906 PANTHER PANTOTHENATE KINASE 53 798 IPR004567 GO:0004594|GO:0005524|GO:0015937
Vvi17g0845 906 MobiDBLite consensus disorder prediction 1 31 - -
Vvi17g0845 906 SUPERFAMILY Actin-like ATPase domain 82 225 IPR043129 -
Vvi17g0845 906 Gene3D - 540 628 IPR035073 -
Vvi17g0845 906 Pfam Damage-control phosphatase ARMT1-like domain 613 892 IPR002791 -
Vvi17g0845 906 FunFam Pantothenate kinase 2 225 410 - -
Vvi17g0845 906 MobiDBLite consensus disorder prediction 9 31 - -
Vvi17g0845 906 FunFam Pantothenate kinase 1 84 224 - -
Vvi17g0845 906 Pfam Fumble 84 428 IPR004567 GO:0004594|GO:0005524|GO:0015937
Vvi17g0845 906 NCBIfam type II pantothenate kinase 84 429 IPR004567 GO:0004594|GO:0005524|GO:0015937
Vvi17g0845 906 PIRSF PanK_long 37 906 IPR015844 GO:0004594|GO:0015937
Vvi17g0845 906 FunFam Pantothenate kinase 2 76 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0845 Vvi-Chr17 9731937 9759393 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0845 K24265 - vvi:100255260 1782.69