Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0843 ATGAAGTTTACTGCACTTGTCAAAACTGTTCGTGTTCATCCAACTCTCCCCAAAATAATCGGGCCTTTGCAATCTCGTTTTTTCCAACATGATTTTGTTCCAAGAGAGCCTAATGCCAAGCCCAAGAGGTACAAATATCCGCCCTTCTATGATCCCTATGGCCCTAAGCCTCCACCCTCCGAAAAAGTCGTGGGGCTTGCGGAACGAATTGCAGCCCTAGCCCCTGAAGAACGGCTACAAATTGGTCCCATGCTGAAAGATAGGCTGAGCCTTCCGAAGACGCAAGTGATTTCAACAGAAGGAATGGAATTGGGTTCCCAGGGAGGGGCAGCCGCAGGAGCCGGAAAGGTTGAGGAAAAGGTGGAGAAAACAGCATTTGATGTGAAATTGGAGAAGTTTGAAGCAGCTGCAAAAATCAAGGTGATCAAGGAAGTGAGGGCTTTTACTAGTCTGGGGTTGAAGGAGGCCAAAGACCTTGTTGAGAAGGTGCCTGTTGTGATCAAACAAGGGATCACTAAAGAGGAGGCAAATGACATAATAGAGAAGATAAAGGCTGCTGGAGGAGTTGCAGTGATGGAATAG 582 0.4742 MKFTALVKTVRVHPTLPKIIGPLQSRFFQHDFVPREPNAKPKRYKYPPFYDPYGPKPPPSEKVVGLAERIAALAPEERLQIGPMLKDRLSLPKTQVISTEGMELGSQGGAAAGAGKVEEKVEKTAFDVKLEKFEAAAKIKVIKEVRAFTSLGLKEAKDLVEKVPVVIKQGITKEEANDIIEKIKAAGGVAVME* 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0843 193 CDD Ribosomal_L7_L12 61 192 IPR000206 GO:0003735|GO:0005840|GO:0006412
Vvi17g0843 193 Gene3D - 120 192 IPR014719 -
Vvi17g0843 193 FunFam 50S ribosomal protein L7/L12 122 192 - -
Vvi17g0843 193 SUPERFAMILY ClpS-like 122 192 IPR014719 -
Vvi17g0843 193 Pfam Ribosomal protein L7/L12 C-terminal domain 126 189 IPR013823 GO:0003735|GO:0006412
Vvi17g0843 193 PANTHER 39S RIBOSOMAL PROTEIN L12 25 193 IPR000206 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0843 Vvi-Chr17 9721216 9721797 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0843 K02935 - vvi:100246777 337.806