Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0842 ATGGAAGACAACACGCCTGCAAGCTTCGTCGACCAGTTAGTGGTTCCAGGAGATGTGGTTCTTGATCTATCAAAAATGGGTAACCAGACCATCAAGCTTGGAGGCGGTCTCCATCAGGATTGTGATGCTATTACTGTCACGAAAGCGGGGAGGCTAAGGTTCTCAAAGCCCAATAAATATTGGGTGGAAAGCTCCCAAAAGAGGTATGTGCCATGCGTGGAGGATACTGTTCTTGGAATTGTGGTAGATTCTAAAGCAGATAATTTTCTTGTGGACATCAAAGGACCTGCATTGGCATTTCTGCCTGTGCTTGCATTTGAAGGAGGAACAAGGAGAAATATACCCAAGTTTGAGGCGGGTACATTGCTCTATGTTCGAGTGGTCAAGGCAAACACAGGCATGAATCCTGAGCTTTCATGCACTGATGTGGGAAAGCAGCAGAGTTTGGCCCCCTTAAAGACGGCTACATGTTTGAGTCATCAACAGGCCTATCACGAATGCTGCTGA 507 0.4675 MEDNTPASFVDQLVVPGDVVLDLSKMGNQTIKLGGGLHQDCDAITVTKAGRLRFSKPNKYWVESSQKRYVPCVEDTVLGIVVDSKADNFLVDIKGPALAFLPVLAFEGGTRRNIPKFEAGTLLYVRVVKANTGMNPELSCTDVGKQQSLAPLKTATCLSHQQAYHECC* 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0842 168 SUPERFAMILY Nucleic acid-binding proteins 67 144 IPR012340 -
Vvi17g0842 168 SUPERFAMILY Ribosomal L27 protein-like 7 67 - -
Vvi17g0842 168 FunFam Exosome complex exonuclease RRP40 5 70 - -
Vvi17g0842 168 Gene3D - 71 146 IPR012340 -
Vvi17g0842 168 CDD S1_Rrp40 68 152 IPR037319 GO:0003723
Vvi17g0842 168 PANTHER PNAS-3 RELATED 5 156 IPR026699 GO:0000178|GO:0003723
Vvi17g0842 168 FunFam Exosome complex component RRP40 71 150 - -
Vvi17g0842 168 Gene3D - 5 70 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0842 K03681 - vvi:100241656 293.508