Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0839 ATGGATATGGCGACGAGCTCATCTGATGTAGCCATTGAAGGACTGAGGCCGCTTCTGAGTGATAAGGAAGGTCTGGATGAAATAGCTGCAGCAAAAATTGAGAAGTTGACCGCTGAGTTGCAAGAGCAAGAGCAGGAGCAAGATCATGAGTGTGATCCTGTCGAGAGGATTAAAGACGGGTTTATTCACTTCAAAATCCACCATTTCGACAAGTATCCAGATTACTATAAACAACTTGCAGAAGGGCAGCACCCCAAGTTTCTGGTGTTTGCGTGCTCTGACTCCCGCGTTAGCCCCTCTCATGTCCTCAACTTCAAGCCAGGGGAAGCCTTCATGTGCAGGAACATTGCTAACTTGGTTCCTGCATTTAACCAGTTGAGGTACTCAGGAGTTGGTGCAGTCATTGAATATGCAGTCAAGCATCTTGAGGTGGAGAACATCCTGGTCATAGGGCATAGTCGCTGTGGTGGGATAGAGGCCCTTATGTCTCTTCCTGCTGATGGAACTACTTCCAATGACTTCATCGATGACTGGGTCAAAATTGCTTTACCAGCCAAGGCCAAGGTGGAATCAGAGTGGAGCGATGCAACATTTGAGCAACAATGTGAATATTTGGGAAGGGAATCGGTGAATTTGTCCCTAGTCAATCTGCTGAGTTATCCATATGTGCAAGCAGCATTAGCTAATAAAGCTTTGAAGTTGATGGGTGGTTACTACGACTTCGTTAATGGAACTTTTGGGCTCTGGAAAGCTGATTTTGATATTAAACCCCCAATTATCATATAA 786 0.4542 MDMATSSSDVAIEGLRPLLSDKEGLDEIAAAKIEKLTAELQEQEQEQDHECDPVERIKDGFIHFKIHHFDKYPDYYKQLAEGQHPKFLVFACSDSRVSPSHVLNFKPGEAFMCRNIANLVPAFNQLRYSGVGAVIEYAVKHLEVENILVIGHSRCGGIEALMSLPADGTTSNDFIDDWVKIALPAKAKVESEWSDATFEQQCEYLGRESVNLSLVNLLSYPYVQAALANKALKLMGGYYDFVNGTFGLWKADFDIKPPIII* 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0839 261 Pfam Carbonic anhydrase 88 245 IPR001765 GO:0004089|GO:0008270
Vvi17g0839 261 Gene3D Carbonic anhydrase 42 260 IPR036874 GO:0004089|GO:0008270
Vvi17g0839 261 SMART Pro_CA_2 80 250 IPR001765 GO:0004089|GO:0008270
Vvi17g0839 261 FunFam Carbonic anhydrase 49 257 - -
Vvi17g0839 261 ProSitePatterns Prokaryotic-type carbonic anhydrases signature 1. 92 99 IPR015892 GO:0004089|GO:0008270|GO:0015976
Vvi17g0839 261 ProSitePatterns Prokaryotic-type carbonic anhydrases signature 2. 136 156 IPR015892 GO:0004089|GO:0008270|GO:0015976
Vvi17g0839 261 CDD beta_CA_cladeB 60 249 IPR045066 GO:0004089|GO:0008270
Vvi17g0839 261 Coils Coil 26 46 - -
Vvi17g0839 261 PANTHER CARBONIC ANHYDRASE 30 252 IPR001765 GO:0004089|GO:0008270
Vvi17g0839 261 SUPERFAMILY beta-carbonic anhydrase, cab 53 255 IPR036874 GO:0004089|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0839 Vvi-Chr17 9687660 9689418 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0839 K01673 - vvi:100258765 499.975