Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0838 ATGGATATGGCGAAGAGCTCAACTGAGGTAGCCATTGAAGGACTAAAGCGGCTTCTGAGTGATAAGGAAGGACTGGATGAAATAGCTGCTGCAAAAATTGAGAAGTTGACAGCTGATTTGCAAGAGCAAGATCATGAGGAGGAGTTTGACCCTGTCAGGAGGATTAAAGATGGGTTTATTCACTTCAAGATCCACCATTTCGACAAGTATCCAGATTACTATAAACAACTTGCAGAAGGGCAGCACCCCAAGTTTCTGGTGTTTGCGTGCTCTGATTCCCGCGTTAGCCCCTCTCATGTCCTCAACTTCAAGCCAGGGGAAGCCTTCATGTGCAGGAACATTGCTAACATGGTTCCTGCATTTAATCAGTTGAGATACTCAGGAGTTGGTGCAGTCATTGAATATGCAGTCAAGCATCTTGAGGTGGAGAACATCCTGGTCATAGGACATAGTCGCTGCGGTGGGATACAGGCCCTTATGTCTCTTCCTGCTGATGGAACTACTTCCAATGACTTCATCGATGACTGGGTCAAAATCGGTTTACCAGCCAAGGCCAAGGTGGAATCAGAGTGGAGCGACGCAACATTTGAGGAACAATGTGAACATTGTGAAAAGGAGTCGGTGAATTTGTCTCTGGTCAATCTATTGAGCTATCCGTATGTGCGAGCAGCACTAGCTAACAGAGCTTTGAAGTTGATGGGTGGTTACTATGATTTCGTTAATGGAACTTTTGGGCTATGGAAAGCTGATTTTGATATCACACCCGAAATTATCATATAA 780 0.45 MDMAKSSTEVAIEGLKRLLSDKEGLDEIAAAKIEKLTADLQEQDHEEEFDPVRRIKDGFIHFKIHHFDKYPDYYKQLAEGQHPKFLVFACSDSRVSPSHVLNFKPGEAFMCRNIANMVPAFNQLRYSGVGAVIEYAVKHLEVENILVIGHSRCGGIQALMSLPADGTTSNDFIDDWVKIGLPAKAKVESEWSDATFEEQCEHCEKESVNLSLVNLLSYPYVRAALANRALKLMGGYYDFVNGTFGLWKADFDITPEIII* 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0838 259 SUPERFAMILY beta-carbonic anhydrase, cab 52 253 IPR036874 GO:0004089|GO:0008270
Vvi17g0838 259 Gene3D Carbonic anhydrase 40 259 IPR036874 GO:0004089|GO:0008270
Vvi17g0838 259 ProSitePatterns Prokaryotic-type carbonic anhydrases signature 1. 90 97 IPR015892 GO:0004089|GO:0008270|GO:0015976
Vvi17g0838 259 FunFam Carbonic anhydrase 47 255 - -
Vvi17g0838 259 SMART Pro_CA_2 78 248 IPR001765 GO:0004089|GO:0008270
Vvi17g0838 259 CDD beta_CA_cladeB 58 247 IPR045066 GO:0004089|GO:0008270
Vvi17g0838 259 ProSitePatterns Prokaryotic-type carbonic anhydrases signature 2. 134 154 IPR015892 GO:0004089|GO:0008270|GO:0015976
Vvi17g0838 259 Pfam Carbonic anhydrase 86 243 IPR001765 GO:0004089|GO:0008270
Vvi17g0838 259 PANTHER CARBONIC ANHYDRASE 33 250 IPR001765 GO:0004089|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0838 Vvi-Chr17 9662590 9664418 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0838 K01673 - vvi:104882284 515.768