Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0830 ATGGCTCTGAATCTCCTCCCTCCGGCAGAAATTAAGTTAATTTCGTTCCTGGATTCCACTAAATCCACTCGCCTCCCCAAGCTTCCAGGTGGATTTGTTTTAAAGAGAAAGGATTATGGAGCAACATTTGGTAGAAGAGTTAACTGTTCAGCACAGCCGCCTCCTCCAGCCTGGCCAGGACGAGCTGTTCCTGAGCTGGGGCGCAAGACTTGGGATGGTCCAAAGCCTCTCTCAGTTGTTGGATCTACTGGCTCCATTGGAACTCAGACACTGGACATAGTTGCAGAGAATCCTGATAAATTCAGAATTGTGGCACTTGCAGCTGGTTCCAATGTGACTCTTCTTGCTGATCAGGTGAAGACGTTCAAGCCTCAATTAGTTGCTGTGAGAAATGAGGCATTAGTCAATGAACTCAAAGAGGCTTTGGCTGACTGTGAACACAAGCCTGAGATCATCCCTGGAGAGCAAGGTGTAATTGAGGTTGCCCGCCACCCAGAGGCAGTCACTGTAGTGACAGGAATAGTAGGTTGCGCAGGTTTAAAACCTACAGTGGCTGCAATAGAAGCAGGGAAAGACATAGCCTTAGCCAACAAAGAGACCCTAATTGCTGGGGGTCCTTTTGTCCTTCCTCTTGCACACAAGCACAATGTAAAGATCCTTCCTGCTGACTCAGAACACTCTGCAATATTTCAGTGTATTCAGGGTTTGCCTGAGGGAGCACTTCGGCGCATTCTTTTAACTGCATCTGGAGGGGCATTCAGGGATTGGCCCGTTGATAAATTGAAAGAAGCTAAAGTTTCAGATGCTTTGAAGCATCCTAACTGGAATATGGGGAAAAAGATCACGGTTGACTCAGCTACCCTTTTCAATAAGGGTTTAGAAGTTATTGAAGCACACTATCTGTTTGGGGCTGAATATGATGATATTGAGATCATAATTCATCCACAATCTATCATACATTCTATGGTCGAAACACAGGATTCGTCTGTCCTGGCACAGTTGGGGTGGCCTGATATGCGTTTGCCAATCCTCTATACTTTATCGTGGCCAGACAGAATTTACTGCTCTGAGATAACTTGGCCACGACTTGATCTTTGCAAGCTTGGGTCACTGACATTTAAAACTCCTGACAATGTGAAATATCCATCCATGGATCTTGCCTATGCTGCTGGACGGGCTGGAGGCACCATGACAGGAGTTCTTAGTGCAGCTAATGAGAAGGCTGTGGAGATGTTTATTGATGAAAAGATTGGCTATCTAGATATATTCAAGGTCGTGGAACTAACATGTGATAAGCACCAGGCAGAGTTAGTAACTTCACCATCCCTCGAGGAAATCGTACATTATGACCTCTGGGCCCGGGACTATGCAGCCAGTTTACATCATTCTTCCAGTTTAATGCCTGTTCCAGCATGA 1416 0.459 MALNLLPPAEIKLISFLDSTKSTRLPKLPGGFVLKRKDYGATFGRRVNCSAQPPPPAWPGRAVPELGRKTWDGPKPLSVVGSTGSIGTQTLDIVAENPDKFRIVALAAGSNVTLLADQVKTFKPQLVAVRNEALVNELKEALADCEHKPEIIPGEQGVIEVARHPEAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNVKILPADSEHSAIFQCIQGLPEGALRRILLTASGGAFRDWPVDKLKEAKVSDALKHPNWNMGKKITVDSATLFNKGLEVIEAHYLFGAEYDDIEIIIHPQSIIHSMVETQDSSVLAQLGWPDMRLPILYTLSWPDRIYCSEITWPRLDLCKLGSLTFKTPDNVKYPSMDLAYAAGRAGGTMTGVLSAANEKAVEMFIDEKIGYLDIFKVVELTCDKHQAELVTSPSLEEIVHYDLWARDYAASLHHSSSLMPVPA* 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0830 471 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 74 223 IPR036291 -
Vvi17g0830 471 Pfam DXP reductoisomerase C-terminal domain 334 455 IPR026877 -
Vvi17g0830 471 Gene3D - 379 464 - -
Vvi17g0830 471 FunFam 1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic 379 463 - -
Vvi17g0830 471 Pfam 1-deoxy-D-xylulose 5-phosphate reductoisomerase 78 205 IPR013512 GO:0070402
Vvi17g0830 471 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 200 337 - -
Vvi17g0830 471 PIRSF Dxp_reductoisomrs 74 466 IPR003821 GO:0008299|GO:0030604|GO:0046872
Vvi17g0830 471 FunFam 1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic 69 223 - -
Vvi17g0830 471 NCBIfam 1-deoxy-D-xylulose-5-phosphate reductoisomerase 75 457 IPR003821 GO:0008299|GO:0030604|GO:0046872
Vvi17g0830 471 Gene3D - 69 223 - -
Vvi17g0830 471 PANTHER 1-DEOXY-D-XYLULOSE 5-PHOSPHATE REDUCTOISOMERASE 28 470 IPR003821 GO:0008299|GO:0030604|GO:0046872
Vvi17g0830 471 Hamap 1-deoxy-D-xylulose 5-phosphate reductoisomerase [dxr]. 77 460 IPR003821 GO:0008299|GO:0030604|GO:0046872
Vvi17g0830 471 Pfam 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain 219 302 IPR013644 GO:0005515
Vvi17g0830 471 SUPERFAMILY 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 367 461 IPR036169 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0830 K00099 - vvi:100248516 929.858