Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0828 ATGGAGACTATGGCGGTTGAGCCCTGGGATGTGATGTATCATACTGCAAATCACGGTGATGAAGCATCTGTATCGGATTGCGAAAGCGGCACTACCCATAATGAGCACATTCATGGGCTGGTGAGATTGGATGAAGATGAAAAACTGCACCGCATTATCGAGAAAGCATTAGTTTCTGGCTTGGGTCCCCTTCGACAGCACACGTCGGTTGTGGACATCCATAGAAATGGGTACGCCAGTGTTATCTCCCAAGCCCGGTTGCAATCGTTTAGGATTTTCGGGCGCGCGGTGGAGAAGAAGTGTGAGGGCAATGCTAATGTGAAATTTGGGTGGTATTCTGCATCGAAGGATGAGATTGGTAGAATCATCTCTCATGGTTTTAGCCACAGCAATGGGTTATATGGCTGCGGGGTCTATCTATATCCACATCATTCTTCCATTGAAAGTATGAAATCGTGTGTTGTTGATGAGGATGGTCTAAGACATCTGTTACTTTGCCGAGTAATTTTGGGGAAAATGGAGGTCGTGCATCCAGGGTCTCAACAGTATCATCCGAGTTCTGAAGACTTCGATTCAGGTGTTGACAATCTTCCAGCTCCTAAGAAGTATATTGTGTGGAGCACCCACATGAATACCCATATTTTGCCAGAATATGTTGTAACCTTCAGAGCTCCTCCTTGCTTGAAAGGATTCCTCAATACGCAAGGTTCCTTGAAGAAACCAACTTCCCCTTGGATGCCTTTTACAACTCTAATCTCTGTGCTTTCCAAGTTCTTACCTCCTCAATCCGTTAACTTGATTGCCAAGCATCACCGTGATCATAGAGAGAATAAGATCCCACGACATGAGCTGATTCGACTAGTCAGACAAATAGCGGGGGATAAGTTGCTCACAGTGGTCATCAAATCCCATAGAGCCAAGGTCATATTTGTTGTTACCTTGCTTTAG 948 0.4525 METMAVEPWDVMYHTANHGDEASVSDCESGTTHNEHIHGLVRLDEDEKLHRIIEKALVSGLGPLRQHTSVVDIHRNGYASVISQARLQSFRIFGRAVEKKCEGNANVKFGWYSASKDEIGRIISHGFSHSNGLYGCGVYLYPHHSSIESMKSCVVDEDGLRHLLLCRVILGKMEVVHPGSQQYHPSSEDFDSGVDNLPAPKKYIVWSTHMNTHILPEYVVTFRAPPCLKGFLNTQGSLKKPTSPWMPFTTLISVLSKFLPPQSVNLIAKHHRDHRENKIPRHELIRLVRQIAGDKLLTVVIKSHRAKVIFVVTLL* 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0828 315 SUPERFAMILY ADP-ribosylation 40 224 - -
Vvi17g0828 315 ProSiteProfiles PARP catalytic domain profile. 28 244 IPR012317 GO:0003950
Vvi17g0828 315 PANTHER INACTIVE POLY [ADP-RIBOSE] POLYMERASE SRO4-RELATED 25 306 IPR044964 -
Vvi17g0828 315 Pfam RCD1-SRO-TAF4 (RST) plant domain 240 305 IPR022003 -
Vvi17g0828 315 Gene3D - 38 224 - -
Vvi17g0828 315 ProSiteProfiles RST domain profile. 239 310 IPR022003 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0828 Vvi-Chr17 9558818 9560880 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0828 - - vvi:100265712 636.721