Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0827 ATGTGGATTTGTCCACTTGTTCACTCTCTCATCGGTTTTTGCAACGATACAATTCTAAGATTATGTCAAGATATTGTGCTGCTCAAAGCTGAAGTTGCAGAGCTCCTGCTGCCCAATGTTATTGTCAATCTGGCTGGAAGGAAAGATTTGGCTGTTGATCTGTGCAAATTAATCTCTTCACAGGTGCAAGAAAATATATTTGTTGAGTCCAATAGGTCAATCAAATCGATTCAGGTTATGTTAGATGCACTTAATGAACTCCGACTGTTTTATGTCATGGAAAGAACTACTTCATCTTCAATACCTCTCAAGCGAGAAACATCAAGGTATGCTAAGCCTTCTAGCTTTGGCTCAAAATCCCGTTCTGCTACTGCAAAGGCTAAAGATTCATCAACTATGTCAAGTGTCGCACTAGTATCGACATCTTTGTGGGAAAAGGTTTATTGGCTTTCCATTGATTATCTTGATGTTGCTAAGTCAGCAATTATTTGTGGCTCATACTTTACCTCTGTAATGTATGTGGAGCATTGGTGTGAAGAGCATTTCAACAGCCTCACTCTGGGGAAGCCAGATTTTTCCCATTGTGAAATGTTACCACATCACATTGAAATACTAGTCTCAGCAATCACTCAAATTAATGAACCTGATAGCTTGTATGGGATCATCCAGTTGCACAAGTTAACCTCGCAAATTATTACCTTTGAGCACGAGGGAAATTGGAGCAAGGCTCTGGAGTATTATGACTTACAAGTAAGGTCAGAACCAGTAGCAGGAATGGATGGCTCTTCCAGAAATTTGTCGCCTGAACATTCTCAACTAACAGTTCATCCATCATTTAGCAAATCAGAAGATGTGATTAGACAGAGGGAACCTTACAAAGGGCTGATTAGATCATTGCAGAAAATTGGTTGTACTCATGTGCTTGATCTGTACTGCCAAGGATTGACTTCTCAGAATGGCCAGTTTCAGCATGATTTAGAATTCACTGAACTGCAGTATGAGGCTGCTTGGCGTGCTGGAAACTGGGATTTCTCCTTACTTTACATGGGAGCTAATTCTCCTTCTTCTAGTCAACACATTAGATGTGATCATTTCAATGAAAACTTGCACAGTTGTTTGAGGGCATTCCAAGAGGGGGATTTCAATGAATTTCATTCAAAACTGAAAGATTCAAAGCAGGAGCTTGTATTGTCTGTGTGTCATGCAAGCGGCCAGAGTACTGAATACATTTACTCAACCATAATTAAACTTCAGATCTTTTATCACCTTGGCATGGCATGGGGTTTACGTTGGGCACCTCCATCTGAAAAGATAGAAACTTCTCCAGGGATGCAAAAAGTATTTTCTGAACCCATCATTCCTACAATGGACCAGTTGTCATGGCTGAATACAGATTGGAGCTCCATTTTGAAGCGAACACAGTTGCATATGAATTTGTTAGAACCATTCATAGCATTCAGGAGAGTTCTGCTCCAAATTTTGAGTAGTAAAGACTGTATGGTTCAACATCTTCTGCAGTCCTCTTCCACACTTCGTAAGGGTTCCAGGTTTTCTCAAGCTGCTGCAGCTCTGCATGAGTTTAAGTTCCTTTGTAACAGAATGGGAGAACAACATTCTGCCTCTTATTGGCTTGGAAGGCTTGAAGAAGCTAAGCTTTTGCGTGCCCAAGGTCAGCATGAGATGGCCATCAACCTCGCAAAATATATATCACAAAATTCACAGTTGAATGAAGAGGCTTCAAATGTGTATCGCTTGGTTGGGAAGTGGCTTGCAGAAACTCGATCTAGCAACTCAAGAACTATTTTAGAAAAGTACTTGAAACGTGCAGTTTTACTTGCTAAGGATAACAAGAACACAGACAAGAAGACCATAGAAAGACAAAGCCAAACACACTTTCATCTTGCACATTATGCAGATGCTTTATTTAGGAGTCATGAGGAAAGACTTGCCTCTAATGAATGGCAAGCAGCAACAAGGCTAAGGAAACACAAGACAATAGAACTGGAAGCACTAATCAAACGACTGAGAAGTTCATCAAAGGGGGAGAAGACTGACTATTCAGTAAAAATTCAAGAGTTGCAGAAGCAACTTGCAATGGATGCAGAGGAGGCTGAAAAATTGCAGGACGACAGAGACAACTTCCTCAGCCTAACATTGGAGGGATATAAACGCTGTTTGGTCTTAGGTGACAAATATGATGTAAGAGTGGTATTTCGACTAGTTTCTCTGTGGTTCAGTCTCTCTTCTAGACAAAATGTCATAAATATGATGCTTAGTACAGTTCAAGAGGTTCAGTCTTACAAGTTTATCCCACTAGTTTACCAAATTGCTTCGAGAATGGGGAGCTCAAAAGATGGTCTGGGTCCTCATAGCTTTCAGTTTGCTTTGGTTTCTCTTGTGAAAAAGATGTCCATTGATCATCCATACCATACAATCTTCCAGCTTTTAGCTCTGGCAAATGGTGACCGTATCAAGGACAAACAGCGTAGTAGAAACTCTTTCGTGGTTGATATGGATAAAAAGCTTGCAGCAGAAAACCTCTTAAAAGAGTTATCTTCATGTCATGGATCTATTATCCAACAAATGAAACAAATGGTGGAGATCTACATCAAACTTGCTGAACTAGAGACAAAAAGAGAGGACACCAATAAAAGGGTAATGCTACCAAGAGAAATTCGTAGTCTTCGACAACTTGAACTTGTACCTGTAGTGACATCCACTTTCCCAGTAGATCGTAATTGCCAATATCATGAGGGCTCCTTCCCCCACTTCAAAGGATTGGGAGATTCAGTTATGATAATGAATGGTATAAATGCTCCAAAAGTGGTTGAATGCCTGGGTTCTGATGGCCAAAAATATCGGCAACTTGCAAAATCTGGAAATGATGACCTGCGGCAAGATGCTGTTATGGAACAATTTTTTAGTTTAGTAAATACTTTTTTAGAGAACCATCGGGACACATGGAAAAGGAGATTAAGAGTGCGCACATACAAGGTTGTACCTTTCACCCCTAGTGCGGGCGTTCTTGAATGGGTAAATGGTACTCTTCCTCTTGGTGAATATCTTATTGGAAGCACGAGGAATGGAGGTGCCCATGGACGCTATGGAATGGAAGACTGGTCATTTTCCAAATGCCGGGAGCACATGACCAATGAAAAAGACAAGCGCAAGGCATTCCAGGAAGTCTGCAAGAACTTCAGACCTGTCATGCATAATTTTTTCTTGGAGAGATTTTTACAACCAGCTGACTGGTTTGAGAAGCGCCTCGCTTACACAAGGAGTGTAGCAGCTAGTTCAATGGTGGGATACATTGTTGGACTTGGAGATCGACATTCCATGAATATACTTATTGATCAAGCCACTGCCGAAGTTGTTCACATAGATCTTGGTGTTGCCTTTGAACAAGGCCTGATGCTCAAAACACCAGAGAGGGTTCCATTTAGGCTGACAAGAGACATAATAGATGGAATGGGAGTTACTGGGGTAGAGGGGGTTTTCAGAAGATGTTGTGAGGAAACTCTTTCTGTCATGCGAACAAATAAAGAAGCACTGCTAACCATTGTTGAAGTTTTTATCCATGATCCCTTATATAAGTGGGCTCTCTCTCCGCTGAAGGCTTTGCAGCGTCAAAAGGAAACTGATGATGATTTGGAGACTAGCTTGGAAGACTTGGAAGAGGAATATGAAGGGAACAAAGATGCTGCACGAGCACTGTTGCGTGTCAAACAAAAACTTGATGGATATGAAGAGGGTGAAATGAGAAGTGTGCATGGGCAGGTTCGACAACTGATACAAGATGCCATCGATCCTGATCGTTTTTGCCGAATGTTTCCTGGATGGGGTGCTTGGTTGTGA 3855 0.4132 MWICPLVHSLIGFCNDTILRLCQDIVLLKAEVAELLLPNVIVNLAGRKDLAVDLCKLISSQVQENIFVESNRSIKSIQVMLDALNELRLFYVMERTTSSSIPLKRETSRYAKPSSFGSKSRSATAKAKDSSTMSSVALVSTSLWEKVYWLSIDYLDVAKSAIICGSYFTSVMYVEHWCEEHFNSLTLGKPDFSHCEMLPHHIEILVSAITQINEPDSLYGIIQLHKLTSQIITFEHEGNWSKALEYYDLQVRSEPVAGMDGSSRNLSPEHSQLTVHPSFSKSEDVIRQREPYKGLIRSLQKIGCTHVLDLYCQGLTSQNGQFQHDLEFTELQYEAAWRAGNWDFSLLYMGANSPSSSQHIRCDHFNENLHSCLRAFQEGDFNEFHSKLKDSKQELVLSVCHASGQSTEYIYSTIIKLQIFYHLGMAWGLRWAPPSEKIETSPGMQKVFSEPIIPTMDQLSWLNTDWSSILKRTQLHMNLLEPFIAFRRVLLQILSSKDCMVQHLLQSSSTLRKGSRFSQAAAALHEFKFLCNRMGEQHSASYWLGRLEEAKLLRAQGQHEMAINLAKYISQNSQLNEEASNVYRLVGKWLAETRSSNSRTILEKYLKRAVLLAKDNKNTDKKTIERQSQTHFHLAHYADALFRSHEERLASNEWQAATRLRKHKTIELEALIKRLRSSSKGEKTDYSVKIQELQKQLAMDAEEAEKLQDDRDNFLSLTLEGYKRCLVLGDKYDVRVVFRLVSLWFSLSSRQNVINMMLSTVQEVQSYKFIPLVYQIASRMGSSKDGLGPHSFQFALVSLVKKMSIDHPYHTIFQLLALANGDRIKDKQRSRNSFVVDMDKKLAAENLLKELSSCHGSIIQQMKQMVEIYIKLAELETKREDTNKRVMLPREIRSLRQLELVPVVTSTFPVDRNCQYHEGSFPHFKGLGDSVMIMNGINAPKVVECLGSDGQKYRQLAKSGNDDLRQDAVMEQFFSLVNTFLENHRDTWKRRLRVRTYKVVPFTPSAGVLEWVNGTLPLGEYLIGSTRNGGAHGRYGMEDWSFSKCREHMTNEKDKRKAFQEVCKNFRPVMHNFFLERFLQPADWFEKRLAYTRSVAASSMVGYIVGLGDRHSMNILIDQATAEVVHIDLGVAFEQGLMLKTPERVPFRLTRDIIDGMGVTGVEGVFRRCCEETLSVMRTNKEALLTIVEVFIHDPLYKWALSPLKALQRQKETDDDLETSLEDLEEEYEGNKDAARALLRVKQKLDGYEEGEMRSVHGQVRQLIQDAIDPDRFCRMFPGWGAWL* 1285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0827 1284 SMART pi3k_hr1_6 954 1248 IPR000403 -
Vvi17g0827 1284 Coils Coil 865 885 - -
Vvi17g0827 1284 FunFam Serine/threonine-protein kinase ATM 853 1012 - -
Vvi17g0827 1284 Pfam FATC domain 1255 1284 IPR003152 GO:0005515
Vvi17g0827 1284 ProSitePatterns Phosphatidylinositol 3- and 4-kinases signature 1. 957 972 IPR018936 GO:0016301
Vvi17g0827 1284 ProSiteProfiles FAT domain profile. 156 821 IPR014009 -
Vvi17g0827 1284 Pfam Phosphatidylinositol 3- and 4-kinase 960 1200 IPR000403 -
Vvi17g0827 1284 Gene3D - 1057 1246 IPR036940 -
Vvi17g0827 1284 SUPERFAMILY Protein kinase-like (PK-like) 859 1212 IPR011009 -
Vvi17g0827 1284 CDD PIKKc_ATM 924 1201 IPR044107 GO:0004674|GO:0006281|GO:0006974
Vvi17g0827 1284 ProSiteProfiles FATC domain profile. 1252 1284 IPR003152 GO:0005515
Vvi17g0827 1284 Coils Coil 690 710 - -
Vvi17g0827 1284 FunFam Serine/threonine-protein kinase ATM 1058 1248 - -
Vvi17g0827 1284 SMART FATC_2 1252 1284 IPR003152 GO:0005515
Vvi17g0827 1284 PANTHER SERINE/THREONINE-PROTEIN KINASE ATM 2 1284 IPR038980 GO:0004674|GO:0006974
Vvi17g0827 1284 Gene3D - 852 1012 - -
Vvi17g0827 1284 Coils Coil 1207 1241 - -
Vvi17g0827 1284 ProSitePatterns Phosphatidylinositol 3- and 4-kinases signature 2. 1094 1114 IPR018936 GO:0016301
Vvi17g0827 1284 ProSiteProfiles Phosphatidylinositol 3- and 4-kinases catalytic domain profile. 927 1240 IPR000403 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0827 Vvi-Chr17 9499539 9556779 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0827 1070 1210 Lipid Metabolism Gene Families AT5G09350 24.503 9.39e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0827 K04728 - vvi:100250198 2536.91