Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0821 ATGGTACTTGTCAGACCCCTGAACTCGCCTTTACTCCCACTGTATCCCGACCAATTCAACCTCCAGACACCATCTAAGACACCTCACCACATCTCCAACCTTGTCATAGTAACATCCCCAGTTTCATGCAGCTTGAGGTTTCAAAAGTTCAATTATAACCCAATTCAGAAATGGAGTTCTAAACCTCTTTCGACAAAAATTCAGACTTTTGTCAGCGTTTCGTTCGCTAATAACGTCATTAGGGAGTATACTGAGGATGGGTTCTTTGATGATGCAATTGGGGTTTATCTTAAAATGCTTGATGATGGTGTCAAGGTCGAGGAGTTTCGGTATTTTCCGTGTTTGATTAAGGCGTTTGGTGGACTTTGTGATGTATACAAGGGCAGGCAGATTCATGGGCATGTGTTGAAATTAGGGGTTTTAGACGATGTTTCGGTTGTGAATTCGCTTTTGACCATGTACTGGAAATGTGGGGTGGTTGAGGACGCAGTTCAAATGTTTGAGAAAATGCCTGAGGTGGATTTAGTTTCATGGAATACAATGATATCTGGGTTTCAGAAATCAATGGACTACACTCGTTCACTGATGTTTTTTAGGTCGATGGTGTGGGAATTTGGCATATATCCAAATCGAGTAGCCTGTGTTTCGTCTATATTATCGTGTTCCTCTCTTCAGTCGTTAACTCATGGGCGAGAGATTCATGGTGTTGTGGTAAAGAGCGGGTTGGATGTTGAAGAATATTTGGTTAGTTCACTGATTGAAATGTACATGAAATGTGGAAGTATTAAGAATGCAGAAAACATTTTTAATAGCATTCTTGATAAAGATTCAGTGAGACGGAATGCAGTGATATGGAACGTGATGATTTCTGGTTATGTTTCTAATGGTTGTTTTTCCCAGGCACTGTTGTTGTTTATAAAGATGATGGTGTGGGGAATAAAACCAGATTATTCAACAATGGTTTCTCTATTTTCTCTCTGCTCTGAGTCACTGGATATAGCATTTGGAAAGCAAATCCATGGCTTGATTTTCAAATTTGGACTCAAGAATAATATAAGAGTTGAAACAGCCCTTTTGGACATGTACTTAAAATGTGGTGATATGGGAACGGGTTTAAAAATATTCAGAAGGTCTCAAAATCATAACCTCATTATGTGGAGTGCTGTCATTTCTAATTGTGCTCAGAGTGGTTGTCCAACCAAGGCATTGGAATTGTTCTATGAATTTAAAATGGAAGATGGCCTTGCAGATTCTGGCATACTTGTGGCAGTACTACGGGCATGTTCCTCCTTGACTCTTAAGCCTGAAGGTATGCAAATTCATGGATTGGCAACAAAAATGGGGTTTGTTTCTGATGTTTTTGTTGGCAGTGCATTAGTTGATCTGTATGCAAAGTGCAGAGATATGGGGTATTCTAAAAAAGTTTTTCTTAGATTATCCCAAAAGGATCTGGTTTCGTGGAATGCTCTTATAAGTGGGTATGCTCAAGATGAGTGTGCGGATGAAGCTTTAAAGGCGTTCCGTGATATGCAATTAGAAGAAATTAGACCCAATACTGTAACAATTGCATGCATTCTTTCAGTTTGTGCTCACCTGTCTGTCATGACCCTTTGTAAAGAGGTTCATGGTTACCTTATACGACAAGGGCTTGGGAGCACTGTTCTTGTAAGCAATTCCCTAATAGCTACCTATGCCAAATGTGGGGACATAAATAGTTCTTTGTATACATTTGAGAAAATGCCTGAAAGAAATGATGTTTCATGGAATTCAATTATATTGGGGATGGGGATGCATAGCCGCACGGATGAAATGATTGTTTTATTTGATAAAATGGTAGCATCAGGCATCAAGCCTGACCATGTGACATTTACAGCTATTCTTTCTGCATGCAGCCATGCAGGGAGGGTAGATGAGGGCTGTAAATATTTTAAAAGCATGGTTGAAGACTTCAATCTCAAACCTCAACTTGAACAGTATACTTGCATGGTTGATCTTCTTGGCCGAGCTGGCCATCTAAACCAAGCATATGACCTGATAATGGCCATGCCTTGTACACCAGATGATCGGATATGGGGATCTTTGCTTGGATCTTGCAAAAATCATGGTGATGAAATTTTGGCTGAAATTGTAGCGAATCACATATTCAAACTTGTTCCTTCTAGTGTTGGTTATCGTGTCCTCCTTGCAAATTTATATGAAAATCTTGGGAAGGGAAGGGAAGGTTCTAAGGTTAGATCAGAAATAAAAGATATGGGACTTAAAAAGAAGCCAGGATGTAGTTGGATTGAAGTTGACAACAATTTTCACATATTTATTGCAGGTGATCGGTCACATTCTCAGTCAGATGAGATTTATGCTGCTGTAGAAAGTTTGACAACAGAGATCAAGAGAGCAGGATATATTCCTCAGATATATAGTTATTGA 2424 0.3944 MVLVRPLNSPLLPLYPDQFNLQTPSKTPHHISNLVIVTSPVSCSLRFQKFNYNPIQKWSSKPLSTKIQTFVSVSFANNVIREYTEDGFFDDAIGVYLKMLDDGVKVEEFRYFPCLIKAFGGLCDVYKGRQIHGHVLKLGVLDDVSVVNSLLTMYWKCGVVEDAVQMFEKMPEVDLVSWNTMISGFQKSMDYTRSLMFFRSMVWEFGIYPNRVACVSSILSCSSLQSLTHGREIHGVVVKSGLDVEEYLVSSLIEMYMKCGSIKNAENIFNSILDKDSVRRNAVIWNVMISGYVSNGCFSQALLLFIKMMVWGIKPDYSTMVSLFSLCSESLDIAFGKQIHGLIFKFGLKNNIRVETALLDMYLKCGDMGTGLKIFRRSQNHNLIMWSAVISNCAQSGCPTKALELFYEFKMEDGLADSGILVAVLRACSSLTLKPEGMQIHGLATKMGFVSDVFVGSALVDLYAKCRDMGYSKKVFLRLSQKDLVSWNALISGYAQDECADEALKAFRDMQLEEIRPNTVTIACILSVCAHLSVMTLCKEVHGYLIRQGLGSTVLVSNSLIATYAKCGDINSSLYTFEKMPERNDVSWNSIILGMGMHSRTDEMIVLFDKMVASGIKPDHVTFTAILSACSHAGRVDEGCKYFKSMVEDFNLKPQLEQYTCMVDLLGRAGHLNQAYDLIMAMPCTPDDRIWGSLLGSCKNHGDEILAEIVANHIFKLVPSSVGYRVLLANLYENLGKGREGSKVRSEIKDMGLKKKPGCSWIEVDNNFHIFIAGDRSHSQSDEIYAAVESLTTEIKRAGYIPQIYSY* 808
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0821 807 Gene3D Tetratricopeptide repeat domain 642 803 IPR011990 GO:0005515
Vvi17g0821 807 Gene3D Tetratricopeptide repeat domain 220 334 IPR011990 GO:0005515
Vvi17g0821 807 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 281 315 IPR002885 -
Vvi17g0821 807 Gene3D Tetratricopeptide repeat domain 421 539 IPR011990 GO:0005515
Vvi17g0821 807 Gene3D Tetratricopeptide repeat domain 540 641 IPR011990 GO:0005515
Vvi17g0821 807 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 143 177 IPR002885 -
Vvi17g0821 807 FunFam Pentatricopeptide repeat-containing protein 74 229 - -
Vvi17g0821 807 NCBIfam pentatricopeptide repeat 621 654 IPR002885 -
Vvi17g0821 807 NCBIfam pentatricopeptide repeat 283 316 IPR002885 -
Vvi17g0821 807 NCBIfam pentatricopeptide repeat 176 210 IPR002885 -
Vvi17g0821 807 NCBIfam pentatricopeptide repeat 485 519 IPR002885 -
Vvi17g0821 807 NCBIfam pentatricopeptide repeat 586 619 IPR002885 -
Vvi17g0821 807 NCBIfam pentatricopeptide repeat 384 413 IPR002885 -
Vvi17g0821 807 Pfam E motif 703 763 IPR046848 -
Vvi17g0821 807 FunFam Uncharacterized protein 431 539 - -
Vvi17g0821 807 FunFam Pentatricopeptide repeat-containing protein, chloroplastic 555 781 - -
Vvi17g0821 807 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 279 803 IPR046960 GO:0003723|GO:0009451
Vvi17g0821 807 Pfam E+ motif 769 795 IPR046849 -
Vvi17g0821 807 Pfam PPR repeat 250 275 IPR002885 -
Vvi17g0821 807 Pfam PPR repeat 384 411 IPR002885 -
Vvi17g0821 807 Pfam PPR repeat 77 104 IPR002885 -
Vvi17g0821 807 Pfam PPR repeat 176 202 IPR002885 -
Vvi17g0821 807 Pfam PPR repeat 147 172 IPR002885 -
Vvi17g0821 807 Pfam PPR repeat family 281 327 IPR002885 -
Vvi17g0821 807 Pfam PPR repeat family 584 631 IPR002885 -
Vvi17g0821 807 Pfam PPR repeat family 482 530 IPR002885 -
Vvi17g0821 807 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 619 654 IPR002885 -
Vvi17g0821 807 FunFam Pentatricopeptide repeat-containing protein chloroplastic 230 334 - -
Vvi17g0821 807 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 483 517 IPR002885 -
Vvi17g0821 807 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 584 618 IPR002885 -
Vvi17g0821 807 Gene3D Tetratricopeptide repeat domain 75 219 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0821 Vvi-Chr17 9353062 9355485 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0821 62 802 Glycoside Hydrolase AT3G49170 31.432 1.48e-128 403
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0821 - - vvi:100260332 1616.67