Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0819 ATGAATGGAAATAAAAAACCAACAGAAAAAACAAATCGGCTGTTGCAGGCACGGTGGTGGAGAAGTCGCCTTCTGGGCTTCTACCTCTTATCTGACATTCCATCTCTGCAACCTTATTTTATTTATATTTATTTTTTTATTACTTTTTCCAGCCAAAATATTCACTGCCCGCTTCCCATTCTGTCCCTACTCCCTTCCAAAAATTCCTTCTCCTGTCTTCTTCCTCTTCTCGACCTTTATATATACTCCCCCAAAAACAAAGAATTTTTTCTCCCTCTATATATATCTCTATATATTACTGAGGCAGCACAGCCTTGGCATCTTTCTCTTCCATGGTTGATTTTTGAGATGCCTGGAGTTGTCATGGAGGGTGTCAACGAAGATGGGGTAGCCAATGAATTAAATGGAAGTTCCACAGCTTTTAAGGAAAATTCAGCTTCAAACAAGTCGCCAAAAAGCAATTTGGGTCTGCAAAGTCCTCCTCGGAGTGCTGGTGTTGAATTCCCTATGAATGGGGTGATTGACACCTCCATCGAACAGCTTTATGATAACGTATGTGAGATGCAGAGTTCTGATCAATCACCATCAAGGGTTAGCTTTGGATCTGAAGGGGAAGAATCAAGGATTGATTCAGAGTTGCGTCATCTTGTGGGTGGAGAGATGAGGGAGGTGGAGATAATGGAGGAAGAGGTGGAAAAGCCAGGGGACAACAGTCGTAGTGATTCTGGTTCTAAGAAGGAAAGCCTGTCTGCAGGTAAGCAGTTTGGGAAGATGGATAAGTCTGAATTAAGTTCGAAATCTGTTTCTCCGGTACATTCAAAGAAAAATTCTCAGTTGGAGTCCGAAGTTTCTTCAAAGTCAAATCCTAAGAGTAGAAGTCCTCAGGGGAAACCTCCCAGTGATAAGCGGAGTGAAAAGAATTTGAGAAACCCAAACGCAGGAGTCACCCCCTTGAAGAAACAGCGGAATTCACCTCTAGGAGGGGTGAAGTTACAGAATGGAACTGATGATTCATCTGAAGCAGGATTGGATAACCCGAATCTTGGGCGATTTCTACTTAAGCAAGCAAGGGATTTGATTTCTTCTGGAGATAATCCACAGAAGGCTCTTGAATTAGCTCTTCGAGCCACAAAATCATATGAGAAATGCGCAAACGGAAAACCCAGTTTAGAACAAGTCATGTGCTTGCATGTTACAGCAGCAATATACTGCAATTTAGGCCAATATAATGAGGCAATCCCAGTTCTTGAGCACTCAATTGAGATTCCAGTGATTGAAGAAGGCCAAGATCATGCACTTGCTAAATTTGCTGGGCATATGCAGTTGGGTGATACTTATGCAATGGTGGGCCAACTTGAGAATTCAATACTCTGTTACACAACGGGTTTGGGAGTCCAGAAACAAGTTTTGGGAGACACGGACCCAAGAGTTGGGGAGACTTGCAGGTACTTGGCTGAAGCTCATGTTCAAGCACTGCAATTTGATGAGGCTGAGAAGCTTTGTCAAATGGCCCTTGACATCCATAGAGAGAATGGTTCACCTGCTTCCCTTGAAGAGGCAGCAGATAGGAGGCTCATGGGGCTTATATGTGAAATGAAGGGCGATCATGAGGCTGCTCTTGAGCATCTTATATTGGCTAGCATGGCTATGGTGGCCAATGGGCAGGAAATAGAGGTGGCTTCTGTTGATTGTAGTATTGGGGACACCTACTTATCTCTGTCTCGGTATGATGAGGCTATTTTTGCTTATCAAAAAGCACTCACTGTTTTTAAGACCACCAAAGGAGAGAATCATCCGTCAGTTGCTTCAGTGTTTGTGCGTCTGGCGGATTTGTATAACAAGACAGGAAAGTTAAGGGAATCAAAATCTTATTGTGAGAATGCCCTTCGAATTTATGGAAAGCCGATTCCTGGCATTCCCCCAGAGGAGATCGCTAGTGGTCTAACTGATGTTTCTGCTATTTATGAGTCCATGGATGAGCTTGAGCAGGCACTCAGCTTGCTCCAGAAAGCATTAAAGATATATAACGATGCCCCTGGTCAGCAAAGCACAACAGCAGGAATTGAAGCCCAGATGGGGGTGATGTATTATATGTTGGGGAACTACTCTGATTCTTACAACTCCTTCAAGAATGCCATTTCAAAGCTCCGTGCAAGTGGAGAGAAGAAATCTGCCTTCTTTGGGATTGCTCTGAATCAAATGGGGCTGGCTTGTGTGCAGCGTTATGCCATAAATGAGGCTGCAGAATTGTTTGAAGAGGCCAGGGATATCTTGGAACAAGAGTATGGACCATATCACCCTGACACACTGGGCGTATATAGCAACCTAGCTGGAACTTATGACGCGGTTGGAAGATTGGATGATGCAATTGAAATCTTGGAACATGTAGTGGGGATGAGGGAGGAAAAGCTTGGGACAGCAAATCCAGATGTGGATGACGAGAAGAGGAGGTTGGCTGAGTTGTTAAAAGAAGCAGGCAAGGTCCGCAACAGAAAAGCCAGATCACTAGAGACCCTCCTTGATGTCAACTCTCAAACTGTAAACAACGATGACATCAAGGTATGA 2565 0.4398 MNGNKKPTEKTNRLLQARWWRSRLLGFYLLSDIPSLQPYFIYIYFFITFSSQNIHCPLPILSLLPSKNSFSCLLPLLDLYIYSPKNKEFFLPLYISLYITEAAQPWHLSLPWLIFEMPGVVMEGVNEDGVANELNGSSTAFKENSASNKSPKSNLGLQSPPRSAGVEFPMNGVIDTSIEQLYDNVCEMQSSDQSPSRVSFGSEGEESRIDSELRHLVGGEMREVEIMEEEVEKPGDNSRSDSGSKKESLSAGKQFGKMDKSELSSKSVSPVHSKKNSQLESEVSSKSNPKSRSPQGKPPSDKRSEKNLRNPNAGVTPLKKQRNSPLGGVKLQNGTDDSSEAGLDNPNLGRFLLKQARDLISSGDNPQKALELALRATKSYEKCANGKPSLEQVMCLHVTAAIYCNLGQYNEAIPVLEHSIEIPVIEEGQDHALAKFAGHMQLGDTYAMVGQLENSILCYTTGLGVQKQVLGDTDPRVGETCRYLAEAHVQALQFDEAEKLCQMALDIHRENGSPASLEEAADRRLMGLICEMKGDHEAALEHLILASMAMVANGQEIEVASVDCSIGDTYLSLSRYDEAIFAYQKALTVFKTTKGENHPSVASVFVRLADLYNKTGKLRESKSYCENALRIYGKPIPGIPPEEIASGLTDVSAIYESMDELEQALSLLQKALKIYNDAPGQQSTTAGIEAQMGVMYYMLGNYSDSYNSFKNAISKLRASGEKKSAFFGIALNQMGLACVQRYAINEAAELFEEARDILEQEYGPYHPDTLGVYSNLAGTYDAVGRLDDAIEILEHVVGMREEKLGTANPDVDDEKRRLAELLKEAGKVRNRKARSLETLLDVNSQTVNNDDIKV* 855
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0819 854 Pfam Tetratricopeptide repeat 729 801 - -
Vvi17g0819 854 Pfam Tetratricopeptide repeat 484 543 - -
Vvi17g0819 854 Pfam Tetratricopeptide repeat 559 632 - -
Vvi17g0819 854 ProSiteProfiles TPR repeat profile. 560 593 IPR019734 GO:0005515
Vvi17g0819 854 MobiDBLite consensus disorder prediction 140 160 - -
Vvi17g0819 854 Gene3D Tetratricopeptide repeat domain 740 850 IPR011990 GO:0005515
Vvi17g0819 854 MobiDBLite consensus disorder prediction 188 344 - -
Vvi17g0819 854 Gene3D Tetratricopeptide repeat domain 547 730 IPR011990 GO:0005515
Vvi17g0819 854 Gene3D Tetratricopeptide repeat domain 335 435 IPR011990 GO:0005515
Vvi17g0819 854 SUPERFAMILY TPR-like 371 806 IPR011990 GO:0005515
Vvi17g0819 854 Coils Coil 811 831 - -
Vvi17g0819 854 Coils Coil 658 678 - -
Vvi17g0819 854 Gene3D Tetratricopeptide repeat domain 436 546 IPR011990 GO:0005515
Vvi17g0819 854 MobiDBLite consensus disorder prediction 261 295 - -
Vvi17g0819 854 ProSiteProfiles TPR repeat profile. 645 678 IPR019734 GO:0005515
Vvi17g0819 854 MobiDBLite consensus disorder prediction 203 243 - -
Vvi17g0819 854 PANTHER PROTEIN KINESIN LIGHT CHAIN-RELATED 3 137 845 - -
Vvi17g0819 854 SMART tpr_5 686 719 IPR019734 GO:0005515
Vvi17g0819 854 SMART tpr_5 770 803 IPR019734 GO:0005515
Vvi17g0819 854 SMART tpr_5 645 678 IPR019734 GO:0005515
Vvi17g0819 854 SMART tpr_5 520 553 IPR019734 GO:0005515
Vvi17g0819 854 SMART tpr_5 602 635 IPR019734 GO:0005515
Vvi17g0819 854 SMART tpr_5 728 761 IPR019734 GO:0005515
Vvi17g0819 854 SMART tpr_5 478 511 IPR019734 GO:0005515
Vvi17g0819 854 SMART tpr_5 560 593 IPR019734 GO:0005515
Vvi17g0819 854 SMART tpr_5 393 426 IPR019734 GO:0005515
Vvi17g0819 854 SMART tpr_5 436 469 IPR019734 GO:0005515
Vvi17g0819 854 MobiDBLite consensus disorder prediction 326 342 - -
Vvi17g0819 854 MobiDBLite consensus disorder prediction 140 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0819 Vvi-Chr17 9345682 9348963 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0819 - - vvi:100255253 1403.65