Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0810 ATGCAAGCGCCAGTGCTGGTTCTCAAGGATTCTTTGACTCGCGAATCAGGAAGTAAGGTCCAGCATGCCAATATCCAAGCGTCAAAGGCTGTGGCTGACATAATCCGCACAACCTTGGGTCCAAGATCCATGTTGAAGATGTTACTTGATGCTGGAGGAGGTATTGTGGTCACTAATGATGGAAATTCTATTCTTCGGGAGTTAGATCTTGCTCATCCAGCTGCTAAGTCCATGATTGAATTAAGCCGCACACAAGATGAAGAAGTTGGTGATGGAACTACTTCAGTCATTGTTCTTGCTGGTGAGATGCTTCATGTTGCGGAAGCTTTCATAGACAAAAACTTTCACCCTACAGTCATATGTCGAGCTTATAATAAAGCTCTTGAGGATGCTATTGCGGTGCTTGACAAGATTGCAGCCCCTGTTGATGTGAATGACCGTGTTGCAATGTTGGGAATGGTGAAGAGTTGTATAGGTACAAAATTTACTGGTCAATTTGGGGATCTAATTGCTGATTTAGCACTTGATGCTACCACAACTGTTGGTGTGGACCTTGGTCAAGGATTGCGAGAAGTGGACATTAAGAAGTACATAAAGGTTGAGAAAGTCCCTGGTGGCCAGTTGGAAGATTCCAAGGTTCTTAAAGGAGTTATGATTAACAAAGATGTTGTGGCCCCTGGAAAAATGAGAAGAAAGATTATCAACCCTCGTATTATTCTTCTTGATTGCCCCCTTGAATATAAAAAAGGGGAGAACCAAACAAATGCAGAGTTGGTTAGAGAAGAAGACTGGGGAATTCTCCTGAAAATGGAGGAAGAATACATTGAGAATCTGTGCATGCAAATACTAAAATTCAAACCCGATTTGGTCATAACAGAAAAGGGGCTTAGTGACCTGGCATGCCATTACTTGAGTAAAGCTGGAGTTAGTGCAATCAGAAGATTGAGGAAAACAGACAACAACAGGATTGCTAAGGCATGTGGAGCTGTTGTTGTAAACAGACCAGATGAACTTCAAGAATCTGATGTAGGAACTAGGGCTGGAATTTTTGAGGTCAAGAAGATTGGAGATGAGTTCTTTGCTTTCATAGATGAGTGCACAGACCCTAAAGCATGCACTGTTCTTCTTAGAGGTGCGAGCAAGGATCTTTTGAATGAAGTGGAAAGAAACTTGCAGGATGCCATGTCTGTGGCAAGAAACATGATAAAGAATCCAAAGCTTGTTCCTGGTGGGGGTGCTACAGAGTTAACTGTTTCAGCTACCCTAAAACAGAAAAGTTCATCTGTTGAAGGCATTGAAAAGTGGCCTTATGAAGCTGCTGCTATAGCTTTTGAGGCTATTCCACGTACTTTGGCACAGAATTGTGGTGTGAATGTGATTAGGACTATGACTGCTTTGCAGGGAAAGCATGCAAATGGTGAAAATGCCTGGATCGGAATAGATGGAAGTACTGGTGCAATTACTGACATGAAGGAGCGTAAGATATGGGATGCTTATAATGTGAAGGCACAGACCTTTAAGACCGCCATCGAGGCTGCTTGCATGCTGCTTAGGATCGACGACATCGTGAGTGGAATAAAAAAGAAACAAGCCCCTGGAGCAGGCCAAGCTCCATCAAAGCCTACAATTGAGCAAGAAGGAGATGCAGACAACGAGCAAATGATTCCGGAGTAA 1674 0.4313 MQAPVLVLKDSLTRESGSKVQHANIQASKAVADIIRTTLGPRSMLKMLLDAGGGIVVTNDGNSILRELDLAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEAFIDKNFHPTVICRAYNKALEDAIAVLDKIAAPVDVNDRVAMLGMVKSCIGTKFTGQFGDLIADLALDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSKVLKGVMINKDVVAPGKMRRKIINPRIILLDCPLEYKKGENQTNAELVREEDWGILLKMEEEYIENLCMQILKFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRKTDNNRIAKACGAVVVNRPDELQESDVGTRAGIFEVKKIGDEFFAFIDECTDPKACTVLLRGASKDLLNEVERNLQDAMSVARNMIKNPKLVPGGGATELTVSATLKQKSSSVEGIEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGSTGAITDMKERKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKKKQAPGAGQAPSKPTIEQEGDADNEQMIPE* 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0810 557 Gene3D - 28 523 IPR027413 -
Vvi17g0810 557 ProSitePatterns Chaperonins TCP-1 signature 1. 36 48 IPR002194 GO:0005524|GO:0006457|GO:0016887|GO:0051082
Vvi17g0810 557 FunFam T-complex protein 1 subunit gamma 365 520 - -
Vvi17g0810 557 SUPERFAMILY GroEL-intermediate domain like 142 404 IPR027410 -
Vvi17g0810 557 SUPERFAMILY GroEL apical domain-like 210 378 IPR027409 -
Vvi17g0810 557 PANTHER CHAPERONIN 15 527 IPR017998 GO:0140662
Vvi17g0810 557 Pfam TCP-1/cpn60 chaperonin family 31 524 IPR002423 GO:0005524
Vvi17g0810 557 NCBIfam thermosome subunit beta 4 524 - -
Vvi17g0810 557 ProSitePatterns Chaperonins TCP-1 signature 3. 85 93 IPR002194 GO:0005524|GO:0006457|GO:0016887|GO:0051082
Vvi17g0810 557 Gene3D - 141 405 IPR027410 -
Vvi17g0810 557 NCBIfam T-complex protein 1 subunit gamma 4 529 IPR012719 GO:0005524|GO:0006457|GO:0016887|GO:0051082
Vvi17g0810 557 NCBIfam thermosome subunit alpha 4 524 - -
Vvi17g0810 557 MobiDBLite consensus disorder prediction 529 557 - -
Vvi17g0810 557 CDD TCP1_gamma 4 525 IPR012719 GO:0005524|GO:0006457|GO:0016887|GO:0051082
Vvi17g0810 557 PRINTS Tailless complex polypeptide 1 (chaperone) signature 407 419 IPR017998 GO:0140662
Vvi17g0810 557 PRINTS Tailless complex polypeptide 1 (chaperone) signature 373 395 IPR017998 GO:0140662
Vvi17g0810 557 PRINTS Tailless complex polypeptide 1 (chaperone) signature 55 73 IPR017998 GO:0140662
Vvi17g0810 557 PRINTS Tailless complex polypeptide 1 (chaperone) signature 33 49 IPR017998 GO:0140662
Vvi17g0810 557 PRINTS Tailless complex polypeptide 1 (chaperone) signature 85 104 IPR017998 GO:0140662
Vvi17g0810 557 FunFam T-complex protein 1 subunit gamma 215 369 - -
Vvi17g0810 557 FunFam T-complex protein 1 subunit gamma 4 147 - -
Vvi17g0810 557 Coils Coil 384 404 - -
Vvi17g0810 557 Gene3D GroEL 215 369 IPR027409 -
Vvi17g0810 557 SUPERFAMILY GroEL equatorial domain-like 14 525 IPR027413 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0810 Vvi-Chr17 9225124 9239655 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0810 168 414 Acyl Lipid Metabolism Gene Families AT4G33240 27.692 1.69e-22 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0810 K09495 - vvi:100255417 1090.87