Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0800 ATGGCAACGGAACCTAAGGCAGCGGCTGAGAATGTGAAAATTGACCTATTCGAAGATGATGATGAGTTTGAAATCAATGAAGAGTGGGAGGATAGGGCTGAAGAAAAAGTAGCAGAGCAATGGGAAGATGATTGGGACGATGATGATGTCCATGATGATTTTTCTCAGCAGTTAAGGAAGGAACTGGAGAATAACATCAAGAAAAGCTAA 210 0.4143 MATEPKAAAENVKIDLFEDDDEFEINEEWEDRAEEKVAEQWEDDWDDDDVHDDFSQQLRKELENNIKKS* 70
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0800 69 PANTHER 26 PROTEASOME COMPLEX SUBUNIT DSS1 1 67 IPR007834 GO:0006406|GO:0008541|GO:0043248
Vvi17g0800 69 Pfam DSS1/SEM1 family 10 64 IPR007834 GO:0006406|GO:0008541|GO:0043248
Vvi17g0800 69 SMART DSS1_SEM1_2 9 64 IPR007834 GO:0006406|GO:0008541|GO:0043248
Vvi17g0800 69 MobiDBLite consensus disorder prediction 29 51 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0800 Vvi-Chr17 9093620 9096690 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0800 K10881 - vvi:100267214 111.694