Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vvi17g0795 | ATGGCCAAAGTTAGTGGTGTTGTCTCCGCTGTATTCATGGCTAAGGCAAATGGTAATGGTGTTGCCTCTGCTGAATTCAAGGCTAATGGGAATGGTTCACCTGAGTTCCATGCAAATTTGCATAGAAAGGAGACAGTGGGAGATGGGGTTATGGCTGAGCATGGAAACACCATTGTCTCATCAGTTTCTTTATTGCCTCCTGAAACTGAGAACAGCAGCAATGGGGATGTTTGTTTCTCGTCTGCAATTCCTGGATGGTATGCTGATGCTCCCCCACTCTGGCCAGGAGAGGCACATGTTTATAAGGTGGAGAAGGTGTTATTTCGAGGAAAATCTGAATACCAGGAGCTTTTCATATTTGAGTCAGCAACATCAGGGAAGATTGTTATCTTGGATGGGTATCTCCAACTCTCAGAAAAGGATGAGTTTGTATACCAAGAGATGCTCACTCACCTTGCCCTTTGCTCCATTCCCAACCCCAAGAAGGTACTGCTCGTAGGAGGAGGAGATGGAGGCATTTTACGGGAGGCTTCTCGTCATTCCTCCCTTGAGCAGATTGATATATGTGAAATAGACAAAATGGTGATTGATGTTTATAAACAATTCTTCCCTGACATAGCAGTTGGGTTTGAGGATCCCCGGGTGTCTGTCTACATTGGTGATGGAGTTGAATTTCTGAAGTCTGTTCCTGAAGCTACTTATGATGCCATCATATTGGATGCATTCCAAGAAATGGGGCCTAGTGCACAAGAGCTTGCTGATAAACACATCTTGGAGTCGGTTGCAAGGGCTCTTCGGCCGGGGGGAGTCCTGTCTACTCAGGCAGAAAGCATGTGGAATAAAAACTTCATCCTCGAAGACATCATTGCAGATTGTCGCAAGATATTCAAAGGCTCTGTCAACTATGCCTGGACAACAGTTCCTGTGTACTCAAGTGGGGTAGTTGGATTCATTCTTTGCGCCACCGAGGGGCCACCGGTTGACTTCAAGCACCCGATAAACCCAATAGATGCAGTGCCGAATCATGGTGTAGCAAAAGGGCCCCCTAAATTTTACAACTCAGAGGTCCATACTGCTGCATTCTGTCTTCCATCATTTCTGAAAGGGGGAAGCTCCAAGAATTAA | 1125 | 0.4604 | MAKVSGVVSAVFMAKANGNGVASAEFKANGNGSPEFHANLHRKETVGDGVMAEHGNTIVSSVSLLPPETENSSNGDVCFSSAIPGWYADAPPLWPGEAHVYKVEKVLFRGKSEYQELFIFESATSGKIVILDGYLQLSEKDEFVYQEMLTHLALCSIPNPKKVLLVGGGDGGILREASRHSSLEQIDICEIDKMVIDVYKQFFPDIAVGFEDPRVSVYIGDGVEFLKSVPEATYDAIILDAFQEMGPSAQELADKHILESVARALRPGGVLSTQAESMWNKNFILEDIIADCRKIFKGSVNYAWTTVPVYSSGVVGFILCATEGPPVDFKHPINPIDAVPNHGVAKGPPKFYNSEVHTAAFCLPSFLKGGSSKN* | 375 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vvi17g0795 | 374 | SUPERFAMILY | S-adenosyl-L-methionine-dependent methyltransferases | 84 | 368 | IPR029063 | - | |
| Vvi17g0795 | 374 | ProSiteProfiles | Polyamine biosynthesis (PABS) domain profile. | 84 | 322 | IPR030374 | - | |
| Vvi17g0795 | 374 | CDD | AdoMet_MTases | 184 | 271 | - | - | |
| Vvi17g0795 | 374 | FunFam | Spermidine synthase | 139 | 373 | - | - | |
| Vvi17g0795 | 374 | Gene3D | Spermidine synthase, tetramerisation domain | 77 | 136 | IPR037163 | - | |
| Vvi17g0795 | 374 | PANTHER | SPERMIDINE/SPERMINE SYNTHASE | 76 | 368 | IPR001045 | GO:0003824 | |
| Vvi17g0795 | 374 | Pfam | Spermine/spermidine synthase domain | 142 | 330 | - | - | |
| Vvi17g0795 | 374 | Hamap | Polyamine aminopropyltransferase [speE]. | 85 | 372 | IPR001045 | GO:0003824 | |
| Vvi17g0795 | 374 | Gene3D | Vaccinia Virus protein VP39 | 137 | 370 | IPR029063 | - | |
| Vvi17g0795 | 374 | NCBIfam | spermidine synthase | 97 | 366 | IPR001045 | GO:0003824 | |
| Vvi17g0795 | 374 | ProSitePatterns | Polyamine biosynthesis (PABS) domain signature. | 163 | 176 | IPR030373 | - | |
| Vvi17g0795 | 374 | Pfam | Spermidine synthase tetramerisation domain | 85 | 139 | IPR035246 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vvi17g0795 | Vvi-Chr17 | 9007209 | 9010760 | Dispersed/Wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vvi17g0795 | K00797 | - | vvi:100243226 | 747.658 |