Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0790 ATGGCCGTAGGGGAGAGACCCACAGTGAAGGTCTCAAACATCCCTAAAACAGCAATAGCCAAGGAGCTCTGGAGCTTCCTGGAGTCCAAGCTGGGACCCAATACAATCTACGCTTTGGAAATCGCCACTGAGCACAAAAACTGGAAGTCCAGAGGCTTCGGCAGAGTTCAGTTCGAGACCCTCCAAGCCAAGCGCGCTGCCGACCTCCTTTCTCTGCAAGGGGACCTCGTTTTCCGGGGCTCAAGCCTCTCCATCTCTGCCACCTTCGATGACATTATTGTTCGACCCGTTGAGCCCAGAAACCAAGTCGACTCGGGGGTTCTCCATGTGGGCTTCTTAGTTGAAGACGATTGCATGTTGGTTTTGGAGTCGTGGGAGGGTGTGAAAACTTTGGTTATGCCTGAGAGGAATAGGGTGGAGTTTTGGGTGGACAAGGATGGGGAGCGGTACAAGTTGGAGGTTCCATTTGACGATGTGTTGGAGAGCTCTGCATGTTGTTTGGGAGGTGGGAAAGTTAATGCGCTGCTTTTGAAGCTCAAGTATGCACCAAAGATCTTCCAAAAATTTGCAGGCCCTAATATAGCTTCAAAGTTCAGTGCTGACCGGTACCATATCTCTAAGGAAGATGCTGAGTTCCTTTGGCTACGGACGACAGATTTTTCGAGTATAAAGTCACTTGGACAGTCAACTTCATTTTGTTGGGAAATTAAAGAAGGATTTCCAGCTTTAGATATTTTTGCTAGTTTTCCATATTATAAAGATCTGACTGAGCTAACTTTAGAACAAGGGGAAGGATTTTGTTCAGATTCTGGGCTAGTTCCTCTTGTGAAATGTGAATCAGGTCCTAAGTTAGCTTATGAAATCCTTTTCCAGCTCAACTCCCTTGTCCATGCTCAAAAGATTAGCCTTGCTGCAGTTGACACTGATTTGATTGAGATACTTAGCAATTTACCTGTAGACACTGCTATTATGATTCTTCAGAAGTTGCATAAACGGAAGTCTACTCGTTATGATCCCATATCATTTATTAAGGCTCAGGCACATATCATCAACATGAACATTAAGAATCTTCCACCATCATCTCACAGCAGGTTAACAAACAATAATGTAATGAGTTGCCATAGAGTCCTTGTTACCCCGTCAAAGATTTATTGCTTGGGTCCTGAGCTTGAGTCTTCTAACTATGTTGTAAAGCACTATGCAGCATATGCTTCAGATTTCGTGAGAGTTTCTTTTGTTGAAGAAGATTGGAGTAAACTTCCTTCAAATGCCCTTTCCATGAGTATTCGTAAAGCTTTCTTTGCCGACCCTTTCAGAACTGAAATATATCATCGAATATTATCTATTCTCCGTGAGGGAATTGTAATTGGAGCTAAAAGATTTCAGTTTCTTGCATTCTCTGCTAGTCAACTCCGTTCGAATTCTGTTTGGATGTTTGCTTCTAATGACAAAGTAAGAGTAGATGATATTAGAGAATGGATGGGCTGCTTCAAAAAGATCCGCAGTGTGTCAAAATGTGCAGCAAGGATGGGTCAATTGTTCAGTTCTTCTGTACAAACACTCCCTGTCCCGGTACAAGATGTTGAGGTTATTCCTGATATTGAAGTTACCTCTGATGGTTTTGGCTACTGCTTCTCAGATGGAATCGGAAAAATTTCACTCTCTTTTGCTAAGCAAGTTGCTCAGAAGTGTGGGTTGCATCAAACACCTTCAGCATTCCAAATTCGATATGGTGGTTATAAAGGTGTTATAGCTGTTGACCGGAATTCCTTCCGGAAGCTCTCTCTACGCAGTAGTATGTTAAAATTTGAATCACAAAACAGGATGCTTAATGTCACTAAGTGGAGTGAGTCTACGCCTTGCTATTTGAACCGGGAGATTGTTTCCCTCTTGTCTACCCTGGGAGTGGAGGATGAAAATTTTGAAGCATTGCTAAATGAACAAATGCATCTTCTGGACAAAATGCTGACAAATAGGCAGGCCGCTCTGGATGTTTTAGAGAGCATGGGTGGGATTGATAATAAAAACATTCTAGCAAAGATGCTGCTTCAGGGTTACGAGCCAAATGTGGAGCCTTACCTTTCAATGATGCTTCAAGCTTATCGTGAGAGCCAATTGTCTGATATAAGAACTAGATGCCGGATTTTTGTCCCAAAGGCCCGTGTTCTAATTGGATGCTTGGACGAGACAGGAATTTTAAATTATGGCCAAGTTTATGTCCGAGTAACCATGACAAAAGCAGAGCACAAATGCCGAAATCAGAGTTTTTTCCAGAAGGTGGATGACACGACCTCTGTAGTAATAGGGAAGGTGATTGTAACCAAAAACCCATGTCTTCATCCAGGAGATATCAGAGTTCTTGATGCAGTTTATGAGGTAGAATTGGAGGAGAAAGGTTTGGTGGATTGTATCCTTTTTCCTCAGAAAGGGGAAAGGCCTCATCCAAATGAGTGTTCTGGTGGCGATCTCGATGGAGATCAATTTTTCATATGCTGGGATGAAGGTCTCATCCCAAGCCAAACTGAGGCCCCCATGGACTACACCAGCAGAAGACCTCGCATAATGGATCATGATGTGACCTTAGAGGAAATCCAAAAGTTTTTTGTTGATTACATGATCAATGACACTCTGGGTGTCATCTCTACTGCACATTTGGTACATGCAGATCGCGAACCAGAGAAAGCCCGGAGTAAAAAATGTCTTGAGCTGGCAACCCTTCACTCCATGGCCGTGGACTTTGCAAAGACGGGAGCCCCAGCAGAGATGCCTAGGGTTTTAAAACCAAAGGAATTTCCGGATTTCATGGAGAGAGTAGACAAACCCATGTACATCTCCAATGGAGCACTGGGGAAGCTCTACCGTGCCACCATTGCCTCAAGAGTGAATGAAAAGTCCAGCTTTGTTTGGTCAGGGACGATCCCAGGCGCTGCCTATGATCATGATCTTGAAGTGGACGGCTTCGAAACCTTTCTCGAAATTGCAAAACTTCACAAGGAGATGTATGCAGAGAAAATGGCCACATTAATGAATTTCTATGGGGCGGAGAGTGAGGATGAAATGCTGACAGGTAATCTGCGAAACAAGTTGATGTATCTGCAGCGGGATAACAGGAGATTCACAGAAATGAAGGATCGAATACTGATATCAGTTAAGAGCCTACAGAAAGAAGCCAAAGAATGGTTGTATGGTAGCTGCAAGCCACACCAACATCAGAAAATGGCCTCAGCTTGGTACCATGTCACTTATCACTCTACTTTCTCTTCACAGACCCCTAATTTCTTGAGCTTCCCTTGGATTGTGGGAGAGGTTTTGCTGGTCATTAAGTCTGCAAATAGCAGAAAAGCTGAAACTTCGAAAGATAATTGTATTCAGCAGAATATGTAA 3384 0.4347 MAVGERPTVKVSNIPKTAIAKELWSFLESKLGPNTIYALEIATEHKNWKSRGFGRVQFETLQAKRAADLLSLQGDLVFRGSSLSISATFDDIIVRPVEPRNQVDSGVLHVGFLVEDDCMLVLESWEGVKTLVMPERNRVEFWVDKDGERYKLEVPFDDVLESSACCLGGGKVNALLLKLKYAPKIFQKFAGPNIASKFSADRYHISKEDAEFLWLRTTDFSSIKSLGQSTSFCWEIKEGFPALDIFASFPYYKDLTELTLEQGEGFCSDSGLVPLVKCESGPKLAYEILFQLNSLVHAQKISLAAVDTDLIEILSNLPVDTAIMILQKLHKRKSTRYDPISFIKAQAHIINMNIKNLPPSSHSRLTNNNVMSCHRVLVTPSKIYCLGPELESSNYVVKHYAAYASDFVRVSFVEEDWSKLPSNALSMSIRKAFFADPFRTEIYHRILSILREGIVIGAKRFQFLAFSASQLRSNSVWMFASNDKVRVDDIREWMGCFKKIRSVSKCAARMGQLFSSSVQTLPVPVQDVEVIPDIEVTSDGFGYCFSDGIGKISLSFAKQVAQKCGLHQTPSAFQIRYGGYKGVIAVDRNSFRKLSLRSSMLKFESQNRMLNVTKWSESTPCYLNREIVSLLSTLGVEDENFEALLNEQMHLLDKMLTNRQAALDVLESMGGIDNKNILAKMLLQGYEPNVEPYLSMMLQAYRESQLSDIRTRCRIFVPKARVLIGCLDETGILNYGQVYVRVTMTKAEHKCRNQSFFQKVDDTTSVVIGKVIVTKNPCLHPGDIRVLDAVYEVELEEKGLVDCILFPQKGERPHPNECSGGDLDGDQFFICWDEGLIPSQTEAPMDYTSRRPRIMDHDVTLEEIQKFFVDYMINDTLGVISTAHLVHADREPEKARSKKCLELATLHSMAVDFAKTGAPAEMPRVLKPKEFPDFMERVDKPMYISNGALGKLYRATIASRVNEKSSFVWSGTIPGAAYDHDLEVDGFETFLEIAKLHKEMYAEKMATLMNFYGAESEDEMLTGNLRNKLMYLQRDNRRFTEMKDRILISVKSLQKEAKEWLYGSCKPHQHQKMASAWYHVTYHSTFSSQTPNFLSFPWIVGEVLLVIKSANSRKAETSKDNCIQQNM* 1128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0790 1127 Gene3D - 2 91 IPR012677 -
Vvi17g0790 1127 CDD RRM_SF 9 86 - -
Vvi17g0790 1127 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 90 IPR000504 GO:0003723
Vvi17g0790 1127 PANTHER RNA-DEPENDENT RNA POLYMERASE 7 1116 IPR007855 GO:0003968
Vvi17g0790 1127 Pfam RNA dependent RNA polymerase 378 955 IPR007855 GO:0003968
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0790 Vvi-Chr17 8977900 8986870 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0790 K11699 - vvi:100260325 2259.18