Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0788 ATGTCTTCTCCAAGCAAGAGGAGAGAAATGGATGTCATGAAGTTGATGATGAGTGATTACAACGTGGAGACGATAAATGATGGACTCAATGAATTCAATGTGGAATTCCATGGACCAAAAGAAAGCCTCTATGAGGGTGGGGTGTGGAAAATTCGTGTTGAACTCCCAGATGCTTATCCTTACAAGTCTCCTTCTATTGGGTTTGTCAACAAGATTTTCCATCCAAATGTTGATGAGTTGTCAGGTTCTGTATGCTTGGATGTCATTAACCAATCATGGAGTCCAATGTTTGATCTTTTAAACGTCTTTGAAGTCTTTCTTCCACAGCTCTTGCTTTATCCAAATGCTTCAGACCCACTTAATGGTGATGCAGCATCAATGATGATGAAGAACAAAGATCAATATGAGAAAAAAGTAAAAGGTAAAAGTTTTTCACACATATAA 444 0.3806 MSSPSKRREMDVMKLMMSDYNVETINDGLNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIFHPNVDELSGSVCLDVINQSWSPMFDLLNVFEVFLPQLLLYPNASDPLNGDAASMMMKNKDQYEKKVKGKSFSHI* 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0788 147 FunFam Ubiquitin-conjugating enzyme 5, E2 1 146 - -
Vvi17g0788 147 SMART ubc_7 4 145 - -
Vvi17g0788 147 Pfam Ubiquitin-conjugating enzyme 11 140 IPR000608 -
Vvi17g0788 147 CDD UBCc 7 140 IPR000608 -
Vvi17g0788 147 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 73 89 IPR023313 -
Vvi17g0788 147 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 1 147 IPR000608 -
Vvi17g0788 147 SUPERFAMILY UBC-like 4 140 IPR016135 -
Vvi17g0788 147 Gene3D Ubiquitin Conjugating Enzyme 1 145 IPR016135 -
Vvi17g0788 147 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 29 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0788 Vvi-Chr17 8959248 8970313 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0788 4 117 Miscellaneous Gene Families AT3G17000 23.770 2.95e-07 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0788 K10576 - vvi:100250088 290.426