Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0783 ATGGGGAAAACCAACAGGAAACGAGGACGTGAACCTAAGGACCCAGTTCCGGAAACCCTTGATTACCAAACCATCGCTGATATGGACGAGGTTTTCTCCGTCAGCAACGTCGAGCTCATTGAGTCTTCCACCGAGCGGCGTCCCCGCGGCCGCCCCCGGAAAAACCCTCAACTATCAGATATGCACGAGAAACCCGTCGTCCTGTCTTCCGCGAGGCGTACATCTCATGCCGCGGAGAATGCTGATTTCGTAGTGTCTATGTCAGTGCCCGGCGATGGGTTGTCAGCGGAACAGCCCTCGAGGATAGAGGCTGTTGCCAGGGTGGTGCCGGCGATGGACGCGGTGGTGAAGGTGTTTTGCGTGCACACAGAACCGAATTTTTCGTTGCCGTGGCAAAGGAAGAGGCAGTACAGTTCGAGCAGTAGTGGGTTTGTGATTGGTGGGAGGAGGGTGTTAACGAATGCCCATTCTGTGGAGCATTATACCCAGGTGAAGCTCAAGAAACGGGGTTCTGATGTCAAGTATTTGGCCACTGTGCTTGCCATTGGGACTGAGTGCGATATTGCTATGCTAACGGTTAACGATGATGAGTTTTGGGAAGGCGTATCCCCTGTGGAGTTTGGGAATTTGCCTACACTACAAGATGCTGTGACTGTAGTGGGGTACCCAATTGGGGGAGACACGATTTCTGTAACAAGTGGTGTTGTATCAAGAATAGAGATCCTATCTTATGTTCATGGGTCCACTGAGCTTCTGGGTTTACAGATAGATGCTGCTATAAACTCTGGAAATTCTGGTGGGCCTGCCTTCAATGAGAAGGGCAATTGTGTGGGCATTGCATTTCAGTCTCTTAAACATGAAGATGCAGAGAATATAGGTTATGTCATACCAACACCAGTCATCAAGCACTTTATCCAAGATTATGAGAAGAATGGAGCATATACTGGATTCCCAATCCTATGCCTTGAGTGGCAGAAGATGGAAAATCCTGATTTGCGAATGGCAATGGGAATGAAACCTGATCAGAAGGGCGTTCGTGTTAGAAGAATTGATCCTACTGCCCCAGAATCTAAAGTTTTAAAGCCATCAGACATTATACTAAGTTTTGATGGTGTTGATATTGCTAATGATGGAACAGTTCCTTTCCGACATGGGGAACGCATTGGCTTTAGTTACCTTGTCTCCCAGAAATATACTGGAGATAATGCTACAATTACAGTTCTTCGCGATTCTAAGATGCTCAAATTTAATATCAAACTTGCAACTCACAGAAGGATTATTCCAGCACACAACAAGGGCAAACCTCCATCATATTACATTATTGCAGGATTTGTTTTTTCTACTGTATCTGTACCATATCTCCGTTCTGAGTATGGAAAGGATTATGAATATGAAGCTCCAGTCAAGCTTTTAGACAAACTCTTACATTCAATGCCCCAATCAGAAGATGAGCAACTTGTTGTGGTTTCTCAGGTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCCCCCCACCACCTTACACACACACACACATGTGTACATGTAG 1545 0.4641 MGKTNRKRGREPKDPVPETLDYQTIADMDEVFSVSNVELIESSTERRPRGRPRKNPQLSDMHEKPVVLSSARRTSHAAENADFVVSMSVPGDGLSAEQPSRIEAVARVVPAMDAVVKVFCVHTEPNFSLPWQRKRQYSSSSSGFVIGGRRVLTNAHSVEHYTQVKLKKRGSDVKYLATVLAIGTECDIAMLTVNDDEFWEGVSPVEFGNLPTLQDAVTVVGYPIGGDTISVTSGVVSRIEILSYVHGSTELLGLQIDAAINSGNSGGPAFNEKGNCVGIAFQSLKHEDAENIGYVIPTPVIKHFIQDYEKNGAYTGFPILCLEWQKMENPDLRMAMGMKPDQKGVRVRRIDPTAPESKVLKPSDIILSFDGVDIANDGTVPFRHGERIGFSYLVSQKYTGDNATITVLRDSKMLKFNIKLATHRRIIPAHNKGKPPSYYIIAGFVFSTVSVPYLRSEYGKDYEYEAPVKLLDKLLHSMPQSEDEQLVVVSQVSLSLSLSLSPPTTLHTHTHVYM* 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0783 514 SUPERFAMILY PDZ domain-like 343 425 IPR036034 GO:0005515
Vvi17g0783 514 MobiDBLite consensus disorder prediction 1 17 - -
Vvi17g0783 514 MobiDBLite consensus disorder prediction 39 74 - -
Vvi17g0783 514 MobiDBLite consensus disorder prediction 1 22 - -
Vvi17g0783 514 Gene3D - 199 310 IPR043504 -
Vvi17g0783 514 Gene3D - 317 425 IPR036034 GO:0005515
Vvi17g0783 514 Pfam PDZ domain 427 492 IPR041517 -
Vvi17g0783 514 FunFam Protease Do-like 9 94 198 - -
Vvi17g0783 514 CDD PDZ_serine_protease 329 418 - -
Vvi17g0783 514 Gene3D - 426 498 IPR046449 -
Vvi17g0783 514 Pfam Trypsin-like peptidase domain 142 279 - -
Vvi17g0783 514 MobiDBLite consensus disorder prediction 42 60 - -
Vvi17g0783 514 Gene3D - 93 198 IPR043504 -
Vvi17g0783 514 Pfam PDZ domain 338 420 IPR001478 GO:0005515
Vvi17g0783 514 PANTHER - 40 492 - -
Vvi17g0783 514 ProSitePatterns HMG-I and HMG-Y DNA-binding domain (A+T-hook). 44 54 IPR000637 GO:0006355
Vvi17g0783 514 PRINTS HtrA/DegQ protease family signature 143 155 IPR001940 GO:0004252|GO:0006508
Vvi17g0783 514 PRINTS HtrA/DegQ protease family signature 171 191 IPR001940 GO:0004252|GO:0006508
Vvi17g0783 514 PRINTS HtrA/DegQ protease family signature 359 371 IPR001940 GO:0004252|GO:0006508
Vvi17g0783 514 PRINTS HtrA/DegQ protease family signature 213 237 IPR001940 GO:0004252|GO:0006508
Vvi17g0783 514 PRINTS HtrA/DegQ protease family signature 250 267 IPR001940 GO:0004252|GO:0006508
Vvi17g0783 514 FunFam protease Do-like 9 200 310 - -
Vvi17g0783 514 SUPERFAMILY Trypsin-like serine proteases 111 312 IPR009003 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0783 Vvi-Chr17 8873567 8878754 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0783 K25897 - vvi:100253563 971.459