Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0782 ATGGCTTCAAGTGCATCGAAGTTCATCAAATGTGTGACGGTAGGAGATGGGGCTGTGGGGAAGACTTGCATGCTTATTTGCTACACCAGCAACAAGTTTCCATCTGACTATATACCAACAGTGTTTGACAACTTCAGTGCAAATGTGGTAGCTGAGGGCACCACTGTTAACTTGGGCCTCTGGGACACAGCTGGGCAAGAAGATTACAATAGATTAAGGCCCTTGAGCTATCAAGGGGCAGATGTCTTCATCTTAGCCTTCTCATTAGTGAGTCGGGCAAGCTACGAAAATGTACTTAAAAAGTGGATTCCTGAGCTTCAGCATTTTGCCCCTGGAATTCCAATTGTACTTGTTGGCACAAAATTGGATCTTCGTGAGGACAAACACTATTTGGCTGATCATCCTGGATTGGTTCCTGTGACCACTGCACAGGGTGAGGAACTCCGCAAACAGATTGGTGCTGCATATTATATTGAATGCAGCTCAAAAACTCAGCAGAATGTGAAAGCTGTCTTTGATGCTGCAATCAAGGTAGTTATCAAGCCACAACAGAAACAAAAGGAGAAGAAAAAAAAACGGCATCGAGGATGGCTGAATGTCTTTGTTGGAAGGAGCCTCATGTGTTTCAAATGA 633 0.4423 MASSASKFIKCVTVGDGAVGKTCMLICYTSNKFPSDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYQGADVFILAFSLVSRASYENVLKKWIPELQHFAPGIPIVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGAAYYIECSSKTQQNVKAVFDAAIKVVIKPQQKQKEKKKKRHRGWLNVFVGRSLMCFK* 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0782 210 PRINTS Transforming protein P21 ras signature 9 30 - -
Vvi17g0782 210 PRINTS Transforming protein P21 ras signature 111 124 - -
Vvi17g0782 210 PRINTS Transforming protein P21 ras signature 157 179 - -
Vvi17g0782 210 PRINTS Transforming protein P21 ras signature 49 71 - -
Vvi17g0782 210 PRINTS Transforming protein P21 ras signature 32 48 - -
Vvi17g0782 210 PANTHER RHO FAMILY GTPASE 7 194 IPR003578 GO:0005525|GO:0007264
Vvi17g0782 210 SMART ras_sub_4 6 182 - -
Vvi17g0782 210 ProSiteProfiles small GTPase Ras family profile. 4 207 IPR001806 GO:0003924|GO:0005525
Vvi17g0782 210 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 7 179 IPR027417 -
Vvi17g0782 210 Gene3D - 2 197 IPR027417 -
Vvi17g0782 210 CDD Rop_like 8 180 - -
Vvi17g0782 210 SMART rho_sub_3 11 182 IPR001806 GO:0003924|GO:0005525
Vvi17g0782 210 ProSiteProfiles small GTPase Rab1 family profile. 4 208 - -
Vvi17g0782 210 FunFam Rac-like GTP-binding protein 3 2 200 - -
Vvi17g0782 210 ProSiteProfiles small GTPase Rho family profile. 2 179 - -
Vvi17g0782 210 SMART rab_sub_5 9 182 - -
Vvi17g0782 210 NCBIfam small GTP-binding protein domain 7 173 IPR005225 GO:0005525
Vvi17g0782 210 Pfam Ras family 10 179 IPR001806 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0782 Vvi-Chr17 8845586 8853593 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0782 5 202 EF-hand Containing Proteins AT5G27540 23.645 6.84e-15 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0782 K04392 - vvi:100253515 400.208