Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0777 ATGCGCTTTACCCCACTTCCCAAACTGTCCCTACTCTTCAGCACCAAAATCCCTCGACTCCAAGAACCTTTCTACGTTCAGTCTCCTCTGGTTTACATCTCATCAAACACCTCATCTGCCATCTGGGAACCATCCGGAACATCTTCATTTTCACTCCCAAGCCATTCAACATTCGTACAACTCCTGAAGAAGAGGCCATCTTTGACTCAGATCAAACAGATACATGCCCAAGTTGTTACTCACGGCTTGGCCCAGAATACCTCTCTCCTTGGACCTCTGATACACTCATATATTGGCTGTAGAAATCTCAGCTTTGCACGGATTGTGTTTGATCAATTCCCTTCTCTGCCGCCCACAATAATATGGAACCTCATGATCCAAGCCTATTCGAAGACACCCAGTTCACAAGAATCACTGTACCTCTTCCATCAAATGCTTGCGCATGGCAGGCCCACTTCAGCAGACAAGTACACCTTTACGTTTGTGTTTACAGCTTGCTCGCGTCATCCCACACTCCGTGGTTATGGTGAAAACGTTCATGGGATGGTTGTGAAAGATGGGTATGAATCGGATATATTTGTGGGGAATTCGTTGGTGAATATGTATTCAATCTTTTCAAGAATGGTTGATGCCAAGAGAGTGTTTGATGAAATGCCTCAAAGGGACGTAATCACTTGGACTAGCGTAGTAAAAGGGTATGCAATGCGTGGGGAGTTCTATAATGAAGCACTTCAATGTTTCAATGATATGCTTTGCCATGATGAGGTGAAGCCTAATGAGGCAGTATTAGTCAGCATCTTATCAGCATGTGCTCATCTTGGGGCCTTGGATCAAGGGAAATGGATTCATGTTTATATAGACAAGAATAGAATTCTGCTGAGTTCAAATATCTCGACTGCTCTTATTGATATGTATGCAAAATGTGGGAGGATAGATTGTGCAAGGCGGGTTTTTGATGGGTTACATAAAAGAGATCTCCTCACATGGACAAGTATGATATCAGGATTATCCATGCATGGGCTTGGTGCAGAATGTCTGTGGACTTTTTCAGAAATGCTAGCAGAAGGGTTTAAACCTGATGATATAACCCTTCTTGGTGTTTTAAATGGATGTAGTCATTCAGGTCTGGTTGAGGAGGAAATTGTTCATGGGATGGTAGTAAAAAGTGGGTTTGAATCAAATTTATATGTGGGCAACTCGGTGATTAATATGTGTTCTGTTTTTGCGAGAATGGAGGATGCCCGCAAAGTTTTCAATCAAATGTCTGAGCGGGATGTGTTTAGTTGGACTAGTCTGTTAGGTGGGTATGCAAAACATGGGGAGATGGATAGAGCCTCTCTTACATTTTTCTGCAACATGTTATGCGATGATAGGGTTAATCCTAATGAGGCTGTTCTGGTTTGTGTTCTATCTGCTTGTGCTCATCTTGGAGCCTTAGATCAGGGAAACTGGATTCATCTTTATATAGACAAGATTGGAATAAGGCAGAGCTCAAACATTTCTACTGCACTCATTGATATGTATGCAAAATGTGGAAGGATTGATTGTGCAAGTAGAGTTTTCAATGGAATTTGTAAACGTGATGTTCTCAGTTTTACAAGCATGATTTCAGGATTATCATATCATGGGCTTGGCAAGGATGCTTTGCGCGGTTCTTCAATCCTGGCTAATATGGAAAGCTTGTGGGGAATTGCACCCAAGATTGAGCACTACGGGTGTTACATTGATTTGCTTGGTCGTGCCGGCTATTTGGAGAGGGCACTTGAAGTTGTCAAAACCATGCCCATGGAACCAGACATTGTTATATGGAGGGCTTTGCTTAGTGCTAGTAGAATCCATCATAATGTTAATCTTGGGGAGCAGATTATCAGTCACATTGGGCAACTGAAATCTAGTGATCATAATGGAGGTGAGGTGCTTCTTTCAAATTTATATGCTTCTTTAGGAAGATGGGAGAGGGTCACAGAAATGAGGAAGCTAATGGTTGATAGGAGGAGTGAGTCAAGCCCTGGATGTAGTTGGATTGAGGTCAATGGTCTTGTTCATGAGTTTCGAGTTGCTGATCAGTTGCATCCCCAGATTGTAGAGATTCGAAACAAGCTGAATGAAATCTTGAAAAGACTAAGTCAAATAGGCTATTCGGCTAATACAATGCAAGTTTCATTTGATTTGAATGAGGAAGAGAAAGAGCAAGCAGTGGCTTGGCATAGTGAGAAGTTAGCTATTGCTTTTGGACTGATGAGTACTGAGCCAGGGACTTTGATTCGGATAGTGAAAAATCTAAGGACATGCGAAGACTGTCATTCAGCTCTGAAGACCATTTCCCAAGTTTATGGCAGGGAAATAGTAGTTAGAGATCGTTCTCGTTTCCACACTTTCATAGAAGGAGACTGTTCATGCAAGGATTTTTGGTAG 2415 0.4219 MRFTPLPKLSLLFSTKIPRLQEPFYVQSPLVYISSNTSSAIWEPSGTSSFSLPSHSTFVQLLKKRPSLTQIKQIHAQVVTHGLAQNTSLLGPLIHSYIGCRNLSFARIVFDQFPSLPPTIIWNLMIQAYSKTPSSQESLYLFHQMLAHGRPTSADKYTFTFVFTACSRHPTLRGYGENVHGMVVKDGYESDIFVGNSLVNMYSIFSRMVDAKRVFDEMPQRDVITWTSVVKGYAMRGEFYNEALQCFNDMLCHDEVKPNEAVLVSILSACAHLGALDQGKWIHVYIDKNRILLSSNISTALIDMYAKCGRIDCARRVFDGLHKRDLLTWTSMISGLSMHGLGAECLWTFSEMLAEGFKPDDITLLGVLNGCSHSGLVEEEIVHGMVVKSGFESNLYVGNSVINMCSVFARMEDARKVFNQMSERDVFSWTSLLGGYAKHGEMDRASLTFFCNMLCDDRVNPNEAVLVCVLSACAHLGALDQGNWIHLYIDKIGIRQSSNISTALIDMYAKCGRIDCASRVFNGICKRDVLSFTSMISGLSYHGLGKDALRGSSILANMESLWGIAPKIEHYGCYIDLLGRAGYLERALEVVKTMPMEPDIVIWRALLSASRIHHNVNLGEQIISHIGQLKSSDHNGGEVLLSNLYASLGRWERVTEMRKLMVDRRSESSPGCSWIEVNGLVHEFRVADQLHPQIVEIRNKLNEILKRLSQIGYSANTMQVSFDLNEEEKEQAVAWHSEKLAIAFGLMSTEPGTLIRIVKNLRTCEDCHSALKTISQVYGREIVVRDRSRFHTFIEGDCSCKDFW* 805
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0777 804 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 551 741 IPR046960 GO:0003723|GO:0009451
Vvi17g0777 804 Gene3D Tetratricopeptide repeat domain 485 691 IPR011990 GO:0005515
Vvi17g0777 804 FunFam Pentatricopeptide repeat-containing protein chloroplastic 380 486 - -
Vvi17g0777 804 Pfam E motif 613 676 IPR046848 -
Vvi17g0777 804 Gene3D Tetratricopeptide repeat domain 284 381 IPR011990 GO:0005515
Vvi17g0777 804 Gene3D Tetratricopeptide repeat domain 178 283 IPR011990 GO:0005515
Vvi17g0777 804 Gene3D Tetratricopeptide repeat domain 49 177 IPR011990 GO:0005515
Vvi17g0777 804 Gene3D Tetratricopeptide repeat domain 382 483 IPR011990 GO:0005515
Vvi17g0777 804 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 222 258 IPR002885 -
Vvi17g0777 804 Pfam PPR repeat 196 222 IPR002885 -
Vvi17g0777 804 Pfam PPR repeat 502 527 IPR002885 -
Vvi17g0777 804 Pfam PPR repeat 531 549 IPR002885 -
Vvi17g0777 804 Pfam PPR repeat 328 357 IPR002885 -
Vvi17g0777 804 Pfam PPR repeat 427 446 IPR002885 -
Vvi17g0777 804 Pfam PPR repeat 121 149 IPR002885 -
Vvi17g0777 804 Pfam PPR repeat 224 251 IPR002885 -
Vvi17g0777 804 Pfam PPR repeat 299 324 IPR002885 -
Vvi17g0777 804 Pfam PPR repeat 571 595 IPR002885 -
Vvi17g0777 804 Pfam PPR repeat 399 425 IPR002885 -
Vvi17g0777 804 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 425 461 IPR002885 -
Vvi17g0777 804 NCBIfam pentatricopeptide repeat 224 259 IPR002885 -
Vvi17g0777 804 NCBIfam pentatricopeptide repeat 328 360 IPR002885 -
Vvi17g0777 804 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 325 359 IPR002885 -
Vvi17g0777 804 FunFam Pentatricopeptide repeat-containing protein 120 278 - -
Vvi17g0777 804 FunFam Pentatricopeptide repeat-containing protein 549 695 - -
Vvi17g0777 804 FunFam Pentatricopeptide repeat-containing protein chloroplastic 279 379 - -
Vvi17g0777 804 Pfam DYW family of nucleic acid deaminases 712 804 IPR032867 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0777 Vvi-Chr17 8786988 8791406 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0777 57 804 Glycoside Hydrolase AT3G49170 33.501 1.30e-133 416
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0777 - - vvi:100243334 802.357