Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0770 ATGTTTTCTCCGAATTTTGGGACATGGGTTCTCATGTTTCTCCTCGTATCTTCCACGTTCGTCCACTCTTCCATGTCCGAAATCGACGCCAAGAAGCGGTATATGAGAGAAAAAGTTCGCAAAATGTTTTACCATGCATATGATAACTACATGGCTCACGCATTTCCACATGATGAGCTAAAGCCTCTTTCCAAAACTTTCACCGACTCCCTTAGTGAGCTTGGGAATCTAAATCTTGAACACTTATCAGAGCACTATAATGGGTCGGCCCTTACACTCATAGAATCATTGTCCAGCCTTGTTATCTTGGGTAACAACACAGAATTTGAAAGAGCAGTTCGTTGGCTTTCTGAAAACCTATCATTTGATGTTGATGTGAGGACAAATCTTTTTGAGTGCAACATAAGAGTTCTTGGAGGACTTGTTTCTGCTCATATTCTTGCAACTGATTCTAGAAACAGGTTAGTGCAAGGAACTTACAAGAATGAGCTACTTATTCTGGCTGAAGATTTAGGGCGGCGCTTTTTACCTGCATTTGATACACCCACTGGATTGCCTTATGCATGGATCAACTTAAAGTACGGAGTGATGGAGAATGAGACAACTGAAACAAGTACATCAGGGTGTGGTTCATTGATTCTTGAAATGGGAGCTTTATCACGATTAACTGGTGATCCCCGATATGAATCTGCAGCTTTGCGTGCTCTTCGTAAATTATGGAGCATGCGAAGCTCTCTGAATCTACTGGGAACAACATTGGATGTGGCAACTGGAGAATGGATAGAGTATTCATCCGGGATAGGTGCTGGTGTTGATTCTTTCTATGAGTATCTTATCAAAGCTCACATTCTTTTTGGGAAGGAGGAGTTATGGAGAATGTTTCAGTCGGCCTATCTTGCTGTGCAGAAATATTTCAGACATGGTCCATGGTACCATGAAGCTGATATGAGAACAGGAAAAGCAACATATTGGCAACTTACCAGCCTCCAAGCATTCTGGCCAGGTGTACAGGTTCTTATAGGGGATATTGCAGCTGCTAATTCGTCACATCGTGAATTTGTTTATGTGTGGGAGAAGTTTGGAGTGCTACCTGAAAGGTATTTGCTGGACCATCAAATGTTGCATCCCACTGAGAAATATTATCCTTTGCGCCCGGAATTGGCAGAATCCACATTTTATTTATATCAGGCGACCAAAGACCCATGGTACATAGAAGTGGGAAAATCAATGGTAGATTCTCTTAATTTATATGCGAAAGTTGAAGGGGGGTTTGCAAGCATTAAAGATGTAACAACTATGCAATTGGAAGACCATCAACACAGTTTCTTCCTTGCTGAAACCTGCAAGTATCTATATCTTCTCTTTGACGATTCATTTTTGGTTGATCGGAATTATGTTTTCACAACTGAGGGTCACCCTCTTCCAGTCATTAGTGCTTGGCATGACAGACTTCCAGAAAATTACATTCCCACCAATGGGACTTCTATCAAGAGTGAAAAGCAAGCAGCAAGACGATCGAGTGCAATGTCTTTGCAAGTGTGTCCTGCAACAACCTTGAACTCTGGACGTAGCAGTCAACAAGTCGAGAGTGCTTGCCACATTCCTGATGCTCAAAGCGACCACAGGTGTCTGACTGAAGATGAATGTGGGGTTGATGCAACCACTTGTAGGCGAAGATCATGCAGCATGGCTGGCTACTGCGGGCTATGGCTGTTCATATGA 1722 0.4268 MFSPNFGTWVLMFLLVSSTFVHSSMSEIDAKKRYMREKVRKMFYHAYDNYMAHAFPHDELKPLSKTFTDSLSELGNLNLEHLSEHYNGSALTLIESLSSLVILGNNTEFERAVRWLSENLSFDVDVRTNLFECNIRVLGGLVSAHILATDSRNRLVQGTYKNELLILAEDLGRRFLPAFDTPTGLPYAWINLKYGVMENETTETSTSGCGSLILEMGALSRLTGDPRYESAALRALRKLWSMRSSLNLLGTTLDVATGEWIEYSSGIGAGVDSFYEYLIKAHILFGKEELWRMFQSAYLAVQKYFRHGPWYHEADMRTGKATYWQLTSLQAFWPGVQVLIGDIAAANSSHREFVYVWEKFGVLPERYLLDHQMLHPTEKYYPLRPELAESTFYLYQATKDPWYIEVGKSMVDSLNLYAKVEGGFASIKDVTTMQLEDHQHSFFLAETCKYLYLLFDDSFLVDRNYVFTTEGHPLPVISAWHDRLPENYIPTNGTSIKSEKQAARRSSAMSLQVCPATTLNSGRSSQQVESACHIPDAQSDHRCLTEDECGVDATTCRRRSCSMAGYCGLWLFI* 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0770 573 Pfam Glycosyl hydrolase family 47 42 475 IPR001382 GO:0004571|GO:0005509|GO:0016020
Vvi17g0770 573 Gene3D - 24 486 IPR012341 GO:0005975
Vvi17g0770 573 PANTHER ER DEGRADATION-ENHANCING ALPHA-MANNOSIDASE-LIKE PROTEIN 2 12 527 IPR044674 GO:0004571|GO:1904380|GO:1904382
Vvi17g0770 573 SUPERFAMILY Seven-hairpin glycosidases 34 487 IPR036026 GO:0004571|GO:0005509|GO:0016020
Vvi17g0770 573 PRINTS Glycosyl hydrolase family 47 signature 441 461 IPR001382 GO:0004571|GO:0005509|GO:0016020
Vvi17g0770 573 PRINTS Glycosyl hydrolase family 47 signature 268 285 IPR001382 GO:0004571|GO:0005509|GO:0016020
Vvi17g0770 573 PRINTS Glycosyl hydrolase family 47 signature 382 406 IPR001382 GO:0004571|GO:0005509|GO:0016020
Vvi17g0770 573 PRINTS Glycosyl hydrolase family 47 signature 127 145 IPR001382 GO:0004571|GO:0005509|GO:0016020
Vvi17g0770 573 PRINTS Glycosyl hydrolase family 47 signature 177 196 IPR001382 GO:0004571|GO:0005509|GO:0016020
Vvi17g0770 573 PRINTS Glycosyl hydrolase family 47 signature 325 341 IPR001382 GO:0004571|GO:0005509|GO:0016020
Vvi17g0770 573 PRINTS Glycosyl hydrolase family 47 signature 42 62 IPR001382 GO:0004571|GO:0005509|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0770 Vvi-Chr17 8732839 8739268 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0770 10 570 Glycoside Hydrolase AT1G27520 77.087 0.0 920
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0770 K10084 - vvi:100245051 1166.37