Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0763 ATGTCAGCCCATCAACCTAGTCATTCAGGTGATTATTCTGCATCTCAATTCTTTCATGTTCAATCAGAGCTAATCTCCCTCTCTTCCCAGCCAAGCTTACCATCAGTTCCTTCCCTCACCTCACAAACCCAACAGCAACAACTCTATCTTCCCAGCACCACCACCACCCACCATTGCGTCACCACTTTCAAAGGCCACACGTCCTACGTATCTTCCCTTGCCCTTGCTGGTAATTTCCTGTTTAGTGGATCTTCTGACAAAGAAATCCGATTGTGGGAGCAAAACTTGAACTCTGAACTTGATCATGAGAATATAAGTAACAACGTGGTAGCTGTGGGAAAGGGTGCAGTGAAGTCCATGGTAGTTTTGGGCGATAAACTCTTCAGTGCCCATCAAGACCACAAAATCCGAGTGTGGAAAATCAATGACCAGGATCCCCATCACCAGAAGTGCACCCGCTTAGCCACACTCCCAACACTTGGTGACCGTGCCATTAAACTTCTAACTCCCAATAATCATGTCCAAATCCGACGGCACAAGAAATGCACATGGGTCCATCACGTTGACACTGTATCTGTGCTCGCGTTATCAGAAGACAACTCCCTCCTCTACTCTGTTTCATGGGATCGATCACTTAAAATTTGGCGAACCACTGACTTCAAATGTTTGGAGTCGGTAGGAAACGCTCATGATGATGCAATAAATGCATTAGCATTATCCCACGATGGATATATATATACCGGCTCAGCTGACAAGACAATTAAGGTGTGGAGGAAAGCCCCGGAAGACAAGAAACATTCACAAGTAGCGACACTGGAGAAACATAATTCTGGGATTAATGCGTTGGCACTGAGCACTGACGGGTCTGTGTTGTATTCTGGTGCAAGTGACAGATCAATAGTGGTTTGGGAGAAGGATTATAGTGGCAACATGGTGGTGGTGGGTGCCCTCAGGGGTCATTCCAAGTCCATATTGTGCCTAGCAGTGGTATCAGATGTGGTATTTAGTGGTTCAGCAGACAATACTATTAGAATTTGGAGAGGCATCCATAAAAGCTACTCATGTTTGGCAATCCTTGAAGGGCATACAGGTCCAGTCAAGTGCTTGACTGCAGCAACTGACTGTTACAACCCATCTAATACATCAACTTCTTATCTTGTTTACAGTGGCAGTTTGGACTGTGACATCAAGGTGTGGCAGATTTTTATTCCTCTTCTTTAG 1221 0.4529 MSAHQPSHSGDYSASQFFHVQSELISLSSQPSLPSVPSLTSQTQQQQLYLPSTTTTHHCVTTFKGHTSYVSSLALAGNFLFSGSSDKEIRLWEQNLNSELDHENISNNVVAVGKGAVKSMVVLGDKLFSAHQDHKIRVWKINDQDPHHQKCTRLATLPTLGDRAIKLLTPNNHVQIRRHKKCTWVHHVDTVSVLALSEDNSLLYSVSWDRSLKIWRTTDFKCLESVGNAHDDAINALALSHDGYIYTGSADKTIKVWRKAPEDKKHSQVATLEKHNSGINALALSTDGSVLYSGASDRSIVVWEKDYSGNMVVVGALRGHSKSILCLAVVSDVVFSGSADNTIRIWRGIHKSYSCLAILEGHTGPVKCLTAATDCYNPSNTSTSYLVYSGSLDCDIKVWQIFIPLL* 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0763 406 PRINTS G protein beta WD-40 repeat signature 80 94 IPR020472 -
Vvi17g0763 406 PRINTS G protein beta WD-40 repeat signature 334 348 IPR020472 -
Vvi17g0763 406 PRINTS G protein beta WD-40 repeat signature 245 259 IPR020472 -
Vvi17g0763 406 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 317 346 - -
Vvi17g0763 406 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 272 304 - -
Vvi17g0763 406 Pfam WD domain, G-beta repeat 222 257 IPR001680 GO:0005515
Vvi17g0763 406 Pfam WD domain, G-beta repeat 59 92 IPR001680 GO:0005515
Vvi17g0763 406 Pfam WD domain, G-beta repeat 354 399 IPR001680 GO:0005515
Vvi17g0763 406 Pfam WD domain, G-beta repeat 315 346 IPR001680 GO:0005515
Vvi17g0763 406 Pfam WD domain, G-beta repeat 269 303 IPR001680 GO:0005515
Vvi17g0763 406 Pfam WD domain, G-beta repeat 186 215 IPR001680 GO:0005515
Vvi17g0763 406 SMART WD40_4 106 140 IPR001680 GO:0005515
Vvi17g0763 406 SMART WD40_4 219 258 IPR001680 GO:0005515
Vvi17g0763 406 SMART WD40_4 177 216 IPR001680 GO:0005515
Vvi17g0763 406 SMART WD40_4 56 93 IPR001680 GO:0005515
Vvi17g0763 406 SMART WD40_4 310 347 IPR001680 GO:0005515
Vvi17g0763 406 SMART WD40_4 352 400 IPR001680 GO:0005515
Vvi17g0763 406 SMART WD40_4 265 304 IPR001680 GO:0005515
Vvi17g0763 406 ProSiteProfiles Trp-Asp (WD) repeats profile. 317 346 IPR001680 GO:0005515
Vvi17g0763 406 Gene3D - 263 402 IPR015943 GO:0005515
Vvi17g0763 406 ProSiteProfiles Trp-Asp (WD) repeats profile. 272 304 IPR001680 GO:0005515
Vvi17g0763 406 ProSiteProfiles Trp-Asp (WD) repeats profile. 227 257 IPR001680 GO:0005515
Vvi17g0763 406 SUPERFAMILY WD40 repeat-like 44 401 IPR036322 GO:0005515
Vvi17g0763 406 Gene3D - 38 163 IPR015943 GO:0005515
Vvi17g0763 406 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 184 215 - -
Vvi17g0763 406 ProSiteProfiles Trp-Asp (WD) repeats profile. 184 225 IPR001680 GO:0005515
Vvi17g0763 406 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 63 93 - -
Vvi17g0763 406 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 227 257 - -
Vvi17g0763 406 ProSiteProfiles Trp-Asp (WD) repeats profile. 63 93 IPR001680 GO:0005515
Vvi17g0763 406 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 25 401 IPR045182 -
Vvi17g0763 406 CDD WD40 63 400 - -
Vvi17g0763 406 Gene3D - 164 262 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0763 Vvi-Chr17 8671015 8672235 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0763 229 400 Acyl Lipid Metabolism Gene Families AT3G18860 28.090 2.89e-10 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0763 - - vvi:100251957 772.696