Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0756 ATGTTGATACTGGCAAACAGACTTTCGTCTCTACGCCCAACAGAACCCCTTCTAAAACCCATATCCTACAACTACAATCTCACAACCACCACATCACCACCGTCGCCGCCGCAAGACGCCACCATCGTCAACCTTGTGCTGAAAACTGACTCACAGACCCTGACGCGAACCCTAGAAAAATACCCAGTCGAATGGACCCCAAACCTCGTCGACAGAGTCCTCAAGCTCCTCTGGAACCACGGCCCCAAAGCCCTCCAATTCTTCAAGTCCCTCGATTATCACCCTACCTATGCACACGTCTCCTCCTCCTTCGACCACGCCATCGACATCGCTGGCCGTTTGCGCGATTACAAGACTCTCTGGACCCTCGTCGACCGTATGCGGACTCGTCGGCTCGGCCCCAATCCCAAAACCTTTGCAATAATCACTGAGAGGTACGTCTCCGCCGGAAAACCGGATAGGGCTATTAAGATATTCTTCTCGATGCATGAACATGGTTGTGTTCAAGATTTGAATTCGTTCAATACAATTCTCGATGTGTTATGCAAATCAAAGCGGGTGGAAATGGCTGATAATAAATTGTTTAAGGTTTTCAGGGGGTTCTTTAGGGCTGGTCAGTTGAAGGAAGCTTGGGAGTTCTTCTTGCAGATGAAGAAGAGAAAATGTGAAATTGATGTTGTCACTTACACTACTGTGGTTCATGGATTTGGAGTTGCTGGTGAGGTTCGAAAAGCTCAAAGGGTTTTTAATGAGATGATTGGGGAGGGGGTACTCCCATCGGTTGCAACTTATAATGCCTTTATTCAAGTGTTGTGTAAGAAAGATAATGTGGAAAATGCAATATCGGTTTTTGAGGAGATGTTGAGGAAGGGTTACATGCCCAATTCAACCACTTACAATGTAGTGATTAGAGGGTTGTGTCATGTGGGGAGAATGGAAAAGGCAATGGAGTTTATGGCCAGAATGAAGGATGATGAGTGTGAGCCGAATGTTCAGATATATAATGTTGTCATTCGTTATTTTTGTGATGCAGAAGAAATTGAGAAGGGTTTGAATGTTTTTGAGAAGATGGGGGATGCAGATTGCTTGCCCAATTTGGATACATACAATATTTTGATTAGCGCAATGTTTGTGAGGAAGAAATCAGACTATTTGTTGACAGCAGGAAAGTTATTGATTGAGATGGTTGAGAGAGGGTTTCTGCCTCGAAAATTTACTTTCAATCGGGTTCTGGATGGGCTTTTGCTGACAGGCAATCAAGATTTTGCAAAAGAAATTCTGAGATTGCAGAGCAGATGTGGCCGTCTTCCTCGTCGGCTCAAGCTGTGA 1329 0.45 MLILANRLSSLRPTEPLLKPISYNYNLTTTTSPPSPPQDATIVNLVLKTDSQTLTRTLEKYPVEWTPNLVDRVLKLLWNHGPKALQFFKSLDYHPTYAHVSSSFDHAIDIAGRLRDYKTLWTLVDRMRTRRLGPNPKTFAIITERYVSAGKPDRAIKIFFSMHEHGCVQDLNSFNTILDVLCKSKRVEMADNKLFKVFRGFFRAGQLKEAWEFFLQMKKRKCEIDVVTYTTVVHGFGVAGEVRKAQRVFNEMIGEGVLPSVATYNAFIQVLCKKDNVENAISVFEEMLRKGYMPNSTTYNVVIRGLCHVGRMEKAMEFMARMKDDECEPNVQIYNVVIRYFCDAEEIEKGLNVFEKMGDADCLPNLDTYNILISAMFVRKKSDYLLTAGKLLIEMVERGFLPRKFTFNRVLDGLLLTGNQDFAKEILRLQSRCGRLPRRLKL* 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0756 442 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 330 364 IPR002885 -
Vvi17g0756 442 NCBIfam pentatricopeptide repeat 333 365 IPR002885 -
Vvi17g0756 442 NCBIfam pentatricopeptide repeat 138 170 IPR002885 -
Vvi17g0756 442 NCBIfam pentatricopeptide repeat 197 226 IPR002885 -
Vvi17g0756 442 NCBIfam pentatricopeptide repeat 298 331 IPR002885 -
Vvi17g0756 442 NCBIfam pentatricopeptide repeat 263 295 IPR002885 -
Vvi17g0756 442 NCBIfam pentatricopeptide repeat 227 260 IPR002885 -
Vvi17g0756 442 Gene3D Tetratricopeptide repeat domain 254 321 IPR011990 GO:0005515
Vvi17g0756 442 Gene3D Tetratricopeptide repeat domain 197 253 IPR011990 GO:0005515
Vvi17g0756 442 Gene3D Tetratricopeptide repeat domain 322 386 IPR011990 GO:0005515
Vvi17g0756 442 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3, MITOCHONDRIAL 103 190 - -
Vvi17g0756 442 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 295 329 IPR002885 -
Vvi17g0756 442 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 225 259 IPR002885 -
Vvi17g0756 442 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 260 294 IPR002885 -
Vvi17g0756 442 Gene3D Tetratricopeptide repeat domain 68 196 IPR011990 GO:0005515
Vvi17g0756 442 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 135 169 IPR002885 -
Vvi17g0756 442 Pfam PPR repeat 146 167 IPR002885 -
Vvi17g0756 442 Pfam PPR repeat 173 190 IPR002885 -
Vvi17g0756 442 Pfam PPR repeat family 329 376 IPR002885 -
Vvi17g0756 442 Pfam PPR repeat family 259 308 IPR002885 -
Vvi17g0756 442 Pfam PPR repeat family 198 236 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0756 Vvi-Chr17 8595971 8597426 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0756 103 428 Glycosyltransferase AT1G05670 25.513 1.02e-36 141
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0756 - - vvi:100263983 880.552