Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0750 ATGATTACCGATTCGATCACCAGCGCTGCGGCCTCGATCTCTAAGGAGTTCGGCAAGAAGAAGAGGACGAACAGGACAGCAAAATTGAAGCAGTGCAAGCTCGATGCTCGCCGCGAGCAATGGCTTTCCAAAGTCAAGAACAATGGATGTAGGGGAGAATCGGAGGGTATTCCGGAATCTTCAATGCATAAGAGAAATGAAAGCAATGAAAGCAATCGTTCATTAGAAAATTTAGAGGTGAGGCCGAGAGGGGGAGAAAATGATGGATCCGTTCACCATGACAGTGATTCGGAGTCCCCTGCAAACAGTCCCACAAGTCATATTAGTAGCATCTTGGGCAGTACTGATTCAGGAACGAATTATCATGCGAGCAGCAGTAGCAGTAGCAGCAGTGGTGGGTGTTGTTCAGGTAGTATCACAGAAGAAGAAGAAGAAGAAGGGAATGATGAATGTTTGGATGATTGGGAGGCTGTTGCTGATGCTTTGGCTGCCGTTGACAAGCAGAAAATCCCAGTCCAGGAAGGCCATGTAGAACAGGAATCGCATGTAGAGCAGAAACCTGTGGTCCGTTCGGGTTCTCCTGGTGGAATAAGTAAGGACACTGGCTTAGGAATTGAAATCCACAAACCAGAACATGTGGGAATGGTTCCTAGGGCCCCAGCAAATGGACAAGCGTGGAGGGCTGATGATGCTTTCAGACCTCAGAGTTTACCGAATTTGTCCAAGCAGCATAGCTTTCCCATGAATTCAGACCGGCATTATGGTCATGGAGGGGTCCCATGGGCTCGTAGCAGTGTTGCGGCCATTCCAATTTCATGCCCCATATGCTATGAAGATTTGGATTTCACGGACTCTAGTTTTTTACCTTGTTCTTGTGGGTTTCGTCTTTGCCTTTTCTGCCACAAGAGGATTCTTGAAGAAGATGGGCGCTGTCCAGGTTGCAGGAAGCCATATGATTGTGATCCTGTTGAGGCAGAGGCCATTGTGAATGGGGGCAGCCTGACATTCCGGTTGGGTCGCTCTTATAGCATGATTGCAAGGTCTTAG 1047 0.4823 MITDSITSAAASISKEFGKKKRTNRTAKLKQCKLDARREQWLSKVKNNGCRGESEGIPESSMHKRNESNESNRSLENLEVRPRGGENDGSVHHDSDSESPANSPTSHISSILGSTDSGTNYHASSSSSSSSGGCCSGSITEEEEEEGNDECLDDWEAVADALAAVDKQKIPVQEGHVEQESHVEQKPVVRSGSPGGISKDTGLGIEIHKPEHVGMVPRAPANGQAWRADDAFRPQSLPNLSKQHSFPMNSDRHYGHGGVPWARSSVAAIPISCPICYEDLDFTDSSFLPCSCGFRLCLFCHKRILEEDGRCPGCRKPYDCDPVEAEAIVNGGSLTFRLGRSYSMIARS* 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0750 348 MobiDBLite consensus disorder prediction 1 150 - -
Vvi17g0750 348 CDD mRING-HC-C4C4_CNOT4 272 316 IPR039515 -
Vvi17g0750 348 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX RELATED 272 339 IPR039780 GO:0004842|GO:0030014
Vvi17g0750 348 ProSiteProfiles Zinc finger RING-type profile. 273 315 IPR001841 -
Vvi17g0750 348 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 268 331 IPR013083 -
Vvi17g0750 348 SUPERFAMILY RING/U-box 271 324 - -
Vvi17g0750 348 MobiDBLite consensus disorder prediction 28 44 - -
Vvi17g0750 348 MobiDBLite consensus disorder prediction 174 196 - -
Vvi17g0750 348 Pfam RING/Ubox like zinc-binding domain 273 319 - -
Vvi17g0750 348 MobiDBLite consensus disorder prediction 57 95 - -
Vvi17g0750 348 MobiDBLite consensus disorder prediction 96 137 - -
Vvi17g0750 348 FunFam RING/U-box superfamily protein 266 331 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0750 Vvi-Chr17 8541942 8543263 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0750 - - vvi:100248510 663.685