Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0745 ATGAACCTCTCACCCTCTCTCCTCATCTCTTCTTCTACCTCTGCGACTCTCCTGAGACCCTCTCATGTCAATCTCAGACCAAACCCTAACCTTAACCGACATTTATTCCCCGCCAAAGCAACCGATTTCTTTGGCTATCAGAGAATATTAGCTAGTGCCGCAAGGATAAGGGCGAAGCCCAAAGAACTCGTCCTCGGAAACCCCTCCGTCACGGTCGAGAAAGGGAAGTACAGCTACGACGTCGAAACTCTGATCAACAAGCTCAGTAGCCTCCCTCCTCGGGGCAGCATCGCTCGATGCCTTGACGTCTTCAAGAATAAGCTATCTCTCAACGACTTCGCTCTCGTTTTCAAGGAGTTCGCGCAACGCGGCGATTGGCAGCGGTCGCTTCGACTCTTCAAGTATATGCAGCGCCAAATCTGGTGCAAACCGAACGAGCACATTTACACTATCATGATCGGCGTACTTGGCCGCGAAGGCTTGCTCGAGAAATGCCAAGAGATATTTGACGAAATGCCCAGCCACGGAGTGGCTCCTAGCGTCTTCTCATTCACAGCATTGATCAACGCGTATGGCCGCAACGGTCAGTACAAATCTTCGCTTGAACTTCTTGATAGAATGAAGAAAGAGAGGGTTTCTCCCAGTATTTTGACTTATAATACTGTGATTAATTCTTGTGCTAGGGGTGGGTTGGATTGGGAGGAGCTATTAGGATTGTTTGCTCAAATGCGGCATGAGGGTATACAAGCTGATATTGTTACTTATAATACTCTGCTTAGTGCTTGTGCTCGAAGGGGTCTTGGGGACGAGGCAGAGATGGTGTTTAGAACAATGAATGAGGGCGGGATTCTTCCTGACATTACAACTTATAGTTATCTTGTTGAGACTTTTGGAAAATTGAATAGGCTTGAGAAGGTTTCAGAGCTTCTTAAAGAAATGGAGTCTGGAGGGAGTTTTCCAGACATAACTTCTTACAATGTCTTATTAGAGGCTCATGCACAATCAGGGTCTATAAAAGAGGCAATGGGTGTGTTTAGACAGATGCAGGGGGCAGGATGCGTGCCAAATGCAGCTACTTATAGTATTTTGTTAAATTTGTATGGGAGGCATGGGAGATATGATGATGTCCGTGATCTTTTTCTTGAGATGAAAGTTAGTAATACAGAGCCAAATGCAGCTACTTATAATATTCTCATTAATGTTTTTGGGGAGGGTGGGTATTTTAAGGAGGTGGTGACTTTGTTCCATGATATGGTGGAGGAGAATGTTGAGCCAAATATGGAGACCTATGAGGGGTTGATATTTGCTTGTGGGAAGGGAGGGCTTCATGAGGATGCCAAGAAAATTCTACTTCACATGAATGAGAAAGGGGTGGTGCCGAGTTCAAAGGCCTATACTGGGGTTATTGAAGCATATGGACAGGCTGCTTTGTATGAGGAAGCGCTTGTTGCATTCAACACAATGAATGAAGTGGGGAGTAAGCCAACTGTGGAAACCTACAATTCATTGATTCAAATGTTTGCAAAAGGTGGGCTTTACAAGGAGTCTGAAGCAATTTTGCTGAAGATGGGTCAGTCTGGTGTTGCACGGAACCGGGATACGTTCAATGGTGTGATTGAAGCTTTTAGACAGGGAGGCCAGTTTGAAGAAGCTATAAAGGCTTATGTTGAGATGGAAAAGGCAAGATGTGATCCTGATGAGCAAACCCTTGAGGCAGTGCTAAGTGTTTATTGCTTTGCCGGTCTTGTGGAAGAGAGCGAAGAGCAGTTTGGGGAAATTAAAGCTTTGGGAATATTACCCAGTGTCATGTGCTATTGCATGATGCTGGCAGTTTATGCAAAGGCTGACAGGTGGGATGATGCCCATCAATTGCTGGATGAGATGTTTACAAATAGGGTATCCAACATTCATCAGGTAATTGGTCAGATGATCAGGGGAGATTATGACGATGATTCTAACTGGCAGATGGTTGAGTATGTCTTTGAGAAACTCAAGTCTGAAGGTTGTAGTTTGGGAGTGAGGTTCTACAATACGCTCTTAGAAGCACTTTGGTGGCTGGGCCAGAAGGAACGTGCAACAAGAGTACTCAATGAAGCAACAAAACGGGGGCTTTTTCCTGAGCTTTTTCGCAAAAACAAACTTGTGTGGTCTGTAGATGTACACAGGATGTGGGAAGGTGCTGCATGTACAGCAATATCAGTTTGGCTCAATAATATGCATGAAATGTTCATTAGTGGGGATGATCTTCCTCAACTAGCAAGTGCTGTAGTTGTGCGTGGGCATATGGAGAAAAGTTCAATAACGCGTGATTTTCCAGTTGCAAAATCTGCATATGCATTTCTAAATGAAGTTTCATCATCCTTCTGTTTCCCTGGTTGGAACAAGGGTCGAATTGTCTGCCAGCGCTCTCAGCTCAAGCGAATTCTATCCGTTACAGAGCAGCATTCAGATGAATACAAAAAGGATAGAATAATCACTCTAAGTAACTCTCCCTTTCCACTTCCTGGAACAAATACATCCATGAGTAATGTCAAAAGAGACCAGCTTAGCAATGCTGATGCTGAAAGAAGCATTATGACTAGAACAGAGCTTATGACAAGCACAGTTTAA 2610 0.4441 MNLSPSLLISSSTSATLLRPSHVNLRPNPNLNRHLFPAKATDFFGYQRILASAARIRAKPKELVLGNPSVTVEKGKYSYDVETLINKLSSLPPRGSIARCLDVFKNKLSLNDFALVFKEFAQRGDWQRSLRLFKYMQRQIWCKPNEHIYTIMIGVLGREGLLEKCQEIFDEMPSHGVAPSVFSFTALINAYGRNGQYKSSLELLDRMKKERVSPSILTYNTVINSCARGGLDWEELLGLFAQMRHEGIQADIVTYNTLLSACARRGLGDEAEMVFRTMNEGGILPDITTYSYLVETFGKLNRLEKVSELLKEMESGGSFPDITSYNVLLEAHAQSGSIKEAMGVFRQMQGAGCVPNAATYSILLNLYGRHGRYDDVRDLFLEMKVSNTEPNAATYNILINVFGEGGYFKEVVTLFHDMVEENVEPNMETYEGLIFACGKGGLHEDAKKILLHMNEKGVVPSSKAYTGVIEAYGQAALYEEALVAFNTMNEVGSKPTVETYNSLIQMFAKGGLYKESEAILLKMGQSGVARNRDTFNGVIEAFRQGGQFEEAIKAYVEMEKARCDPDEQTLEAVLSVYCFAGLVEESEEQFGEIKALGILPSVMCYCMMLAVYAKADRWDDAHQLLDEMFTNRVSNIHQVIGQMIRGDYDDDSNWQMVEYVFEKLKSEGCSLGVRFYNTLLEALWWLGQKERATRVLNEATKRGLFPELFRKNKLVWSVDVHRMWEGAACTAISVWLNNMHEMFISGDDLPQLASAVVVRGHMEKSSITRDFPVAKSAYAFLNEVSSSFCFPGWNKGRIVCQRSQLKRILSVTEQHSDEYKKDRIITLSNSPFPLPGTNTSMSNVKRDQLSNADAERSIMTRTELMTSTV* 870
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0745 869 NCBIfam pentatricopeptide repeat 289 321 IPR002885 -
Vvi17g0745 869 NCBIfam pentatricopeptide repeat 324 357 IPR002885 -
Vvi17g0745 869 NCBIfam pentatricopeptide repeat 534 567 IPR002885 -
Vvi17g0745 869 NCBIfam pentatricopeptide repeat 429 461 IPR002885 -
Vvi17g0745 869 NCBIfam pentatricopeptide repeat 182 215 IPR002885 -
Vvi17g0745 869 NCBIfam pentatricopeptide repeat 394 426 IPR002885 -
Vvi17g0745 869 NCBIfam pentatricopeptide repeat 359 392 IPR002885 -
Vvi17g0745 869 NCBIfam pentatricopeptide repeat 148 180 IPR002885 -
Vvi17g0745 869 NCBIfam pentatricopeptide repeat 253 287 IPR002885 -
Vvi17g0745 869 NCBIfam pentatricopeptide repeat 218 251 IPR002885 -
Vvi17g0745 869 NCBIfam pentatricopeptide repeat 604 631 IPR002885 -
Vvi17g0745 869 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 321 355 IPR002885 -
Vvi17g0745 869 SMART SMR_2 715 803 IPR002625 -
Vvi17g0745 869 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 601 635 IPR002885 -
Vvi17g0745 869 FunFam Pentatricopeptide repeat-containing protein At1g74850, chloroplastic 231 333 - -
Vvi17g0745 869 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 180 214 IPR002885 -
Vvi17g0745 869 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 145 179 IPR002885 -
Vvi17g0745 869 Pfam PPR repeat family 320 365 IPR002885 -
Vvi17g0745 869 Pfam PPR repeat family 393 437 IPR002885 -
Vvi17g0745 869 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 496 530 IPR002885 -
Vvi17g0745 869 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 356 390 IPR002885 -
Vvi17g0745 869 Gene3D Tetratricopeptide repeat domain 92 231 IPR011990 GO:0005515
Vvi17g0745 869 Gene3D Tetratricopeptide repeat domain 232 332 IPR011990 GO:0005515
Vvi17g0745 869 Gene3D Tetratricopeptide repeat domain 468 579 IPR011990 GO:0005515
Vvi17g0745 869 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 426 460 IPR002885 -
Vvi17g0745 869 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 391 425 IPR002885 -
Vvi17g0745 869 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 461 495 IPR002885 -
Vvi17g0745 869 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 286 320 IPR002885 -
Vvi17g0745 869 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 215 250 IPR002885 -
Vvi17g0745 869 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 566 600 IPR002885 -
Vvi17g0745 869 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 531 565 IPR002885 -
Vvi17g0745 869 Pfam Pentatricopeptide repeat domain 168 226 IPR002885 -
Vvi17g0745 869 Pfam Pentatricopeptide repeat domain 239 299 IPR002885 -
Vvi17g0745 869 Pfam Pentatricopeptide repeat domain 453 508 IPR002885 -
Vvi17g0745 869 PANTHER OS03G0856100 PROTEIN 389 813 - -
Vvi17g0745 869 Pfam PPR repeat 604 631 IPR002885 -
Vvi17g0745 869 Pfam PPR repeat 572 598 IPR002885 -
Vvi17g0745 869 Pfam PPR repeat 534 563 IPR002885 -
Vvi17g0745 869 Gene3D Tetratricopeptide repeat domain 590 743 IPR011990 GO:0005515
Vvi17g0745 869 Gene3D Tetratricopeptide repeat domain 333 456 IPR011990 GO:0005515
Vvi17g0745 869 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 251 285 IPR002885 -
Vvi17g0745 869 ProSiteProfiles Smr domain profile. 718 806 IPR002625 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0745 Vvi-Chr17 8440757 8446982 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0745 297 725 Glycosyltransferase AT1G05670 22.506 2.34e-25 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0745 - - vvi:100251853 1715.66