Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0742 ATGACCATGATTTCTGGGTACTCGAAATGTGGGGATGTTGATTCTGCGTGTGAACTATTTGATCAGGTCGGTGGGAAGGATCTGCTCTTGTTTAATGCCGTAATAGCTTGCTATGCTCAAAATAGCAAACTGAAGGAGGCTCTTAAGCTATTTAACATGATGCTCCATCCAAATGTAAATGTTCAGCCAGATGAGATGACTTTGGCTAGTATGACATGTGGCAGTCCGGATTCCTTAAATATGATTATGATTTATCAACCCATGAAAAGTGACCCAAAGAGGATTGAGAAGGAAGCTTAG 300 0.41 MTMISGYSKCGDVDSACELFDQVGGKDLLLFNAVIACYAQNSKLKEALKLFNMMLHPNVNVQPDEMTLASMTCGSPDSLNMIMIYQPMKSDPKRIEKEA* 100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0742 99 Gene3D Tetratricopeptide repeat domain 1 83 IPR011990 GO:0005515
Vvi17g0742 99 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 27 61 IPR002885 -
Vvi17g0742 99 Pfam PPR repeat 2 22 IPR002885 -
Vvi17g0742 99 Pfam PPR repeat family 28 71 IPR002885 -
Vvi17g0742 99 NCBIfam pentatricopeptide repeat 31 55 IPR002885 -
Vvi17g0742 99 NCBIfam pentatricopeptide repeat 2 22 IPR002885 -
Vvi17g0742 99 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3 69 IPR046960 GO:0003723|GO:0009451
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0742 Vvi-Chr17 8395717 8401341 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0742 3 71 Glycoside Hydrolase AT3G49170 28.986 1.70e-06 42.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0742 - - vvi:100855020 132.494