Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0730 ATGGCCCAAAACCGAAGACCCAGAAGCATTATTGAATCTCTTGGCGAAGAAATCATCAGAATCATATCTCCAGTCTCAATCTGCATGTTCCTGGTGGTCCTTCTTGTAACCATCCTCAACTCCGACACCTCTTCATCGTCTTCTTCAGTTTCTACCATAGCAACCATAGCATACAGCGAGGACAGCTCAGACTCGACATGGGACAAATTCAAAGGTGCCCTTTTGAATTCACTTGTTTTTGTGGGTGTTGTCACTGTGGTGACCTTCCTTCTGGTCCTTCTTTTCTATTTGAGATGCACTAAGTTCCTCAAGTACTATATGGGTTTCTCTTCTTTCATTGTTTTGGGCTTCATGGGTGGTGAAATTACTCTGTTCTTGATCCAGGATTTCAGCTTTCCCATTGACTGTATTACATTTCTTGTTGTTTTGTTCAATTTCACTGTTGTGGGTGTTTTGGCCGTGTTCATGTCAAAGATGGCGATCTTGGTAACTCAAGGGTATTTGGTGGTGATTGGGATGTTGGTTGCATATTGGTTTACTCTTCTACCTGAATGGACTACATGGGTGCTATTGGTGGCCATGGCATTGTATGATTTGGCTGCAGTTTTGTTGCCTGGTGGCCCTTTAAGGCTCTTAGTTGAGCTTGCAATATCCAGGGATGAAGACATTCCGGCTTTGGTTTATGAGGCCAGACCAGTGACTTATCAAGATTCATGTCCAGGAGGTGGTGTAGCTCAAAGGAGGGCATGGAGAGAAAGGAGGGGTGTTGGATCAAATTTGAGCGAAAATTCAAATAATTTGGCTACTTCTGATGTAAATGTTAATCCTGATGTGGCTTCAAATTCGACTCTTGGGACATGTTTATCTGTTGGAAGTGGCGAGCAAGAGACTAGTTTGGTCAATGCTGAGGAGGGTCGGGTTTCAGAAGGGAACTCAGAGCTTGTTGTGCCATTAATTGATCATCGAATTAATGTTGGGGAGCATGGACAGGAAGATTCTGTGTCTACTGAAAATTTGCCATTTGAGGGAATTGGGCTGGGATCTTCTGGTGCAATCAAGTTGGGCTTAGGGGATTTTATCTTCTACAGTGTGCTAGTTGGCAGGGCAGCAATGTATGATTTTATGACGGTTTATGCATGTTATCTTGCTATCATAGCTGGTCTTGGTGTTACGTTAATGCTATTGGCAATTTATCAGAAAGCATTGCCAGCTCTTCCAGTGTCAATTTTGCTAGGTGTGTTGTTTTATTTCTTCACTCGATTCTTGCTTGAAGCTTTTATTGTACAATGTTCTTTGAACCTCTTGATGTTCTAG 1314 0.4269 MAQNRRPRSIIESLGEEIIRIISPVSICMFLVVLLVTILNSDTSSSSSSVSTIATIAYSEDSSDSTWDKFKGALLNSLVFVGVVTVVTFLLVLLFYLRCTKFLKYYMGFSSFIVLGFMGGEITLFLIQDFSFPIDCITFLVVLFNFTVVGVLAVFMSKMAILVTQGYLVVIGMLVAYWFTLLPEWTTWVLLVAMALYDLAAVLLPGGPLRLLVELAISRDEDIPALVYEARPVTYQDSCPGGGVAQRRAWRERRGVGSNLSENSNNLATSDVNVNPDVASNSTLGTCLSVGSGEQETSLVNAEEGRVSEGNSELVVPLIDHRINVGEHGQEDSVSTENLPFEGIGLGSSGAIKLGLGDFIFYSVLVGRAAMYDFMTVYACYLAIIAGLGVTLMLLAIYQKALPALPVSILLGVLFYFFTRFLLEAFIVQCSLNLLMF* 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0730 437 Gene3D Presenilin 344 429 IPR042524 -
Vvi17g0730 437 PANTHER PRESENILIN 7 437 IPR001108 GO:0004190|GO:0016020|GO:0016485
Vvi17g0730 437 SMART psh_8 71 423 IPR006639 GO:0004190|GO:0016020
Vvi17g0730 437 PRINTS Presenilin family signature 198 215 IPR001108 GO:0004190|GO:0016020|GO:0016485
Vvi17g0730 437 PRINTS Presenilin family signature 22 32 IPR001108 GO:0004190|GO:0016020|GO:0016485
Vvi17g0730 437 PRINTS Presenilin family signature 181 188 IPR001108 GO:0004190|GO:0016020|GO:0016485
Vvi17g0730 437 FunFam Presenilin 326 428 - -
Vvi17g0730 437 Pfam Presenilin 14 427 IPR001108 GO:0004190|GO:0016020|GO:0016485
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0730 Vvi-Chr17 8208002 8209315 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0730 1 437 Miscellaneous Gene Families AT2G29900 66.362 9.83e-176 495
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0730 K04505 - vvi:100262038 795.808