Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0725 ATGGCTGGGGCTTTTGGGGAAGGAATGATGCATCCAATTGATACTGTGAAGACCCGAATTCAAAGTCAAGCTATTTTAAGGGGAGGCCAGAACCAAAAAACTATAATTCAGATGGTGCATACAATCTGGGCTGCTGATGGGTTGAGAGGATTTTATAGAGGTATAACTCCTGGGCTAACCGGTTCTCTTGCAACCGGAGCAACATATTTTGGTGTCATCGAGTCCACCAAAAAATGGATTGAAGAATCACATCCCAGCCTTGAGGGCCACTGGGCCCATTTCATTGCTGGAAGTGTTGGAGACACACTAGGCTCTTTTGTATATGTTCCATGTGAAGTGATGAAGCAACGCATGCAGGTCCAAGGCACAAAGACAACTTGGAGTTCAGTTATCATAAATGGTACTGCCCGTACAAGACCTGGTCCACAAATGTATGGTTATTATGCAGGAATGTTTCAGGCTGGCTGTTCAATATGGAAGGAGCAGGGCCTAAAAGGATTATATGCAGGATACTGGTCTACGCTTGCCAGGGATGTGCCATTTTCTGGGCTCATGGTAACTTCTTATGAAGCTCTAAAAGATTTAGCAGAGCATGGGAAGCAAAAATGGATACCCAATTCAGATTATAATGTGAATAGTTCTGTTGAGGGACTCGTGTTGGGAGGATTAGCTGGTGGTTTTAGTGCATATCTAACCACTCCTTTGGATGTCATCAAGACAAGATTGCAAGTGCAGGGATCGAATTCAAGCTACAATGGCTGGTTGGACGCAATTCACAGGATATGGATGACCGAAGGTGTCAAAGGAATGTTCAGAGGGAGCATTCCCAGGATTGTATGGTATATTCCAGCCTCTGCTCTTACATTCATGGCCGTGGAGTTCCTTAGAGACCATTTCAATGGAGGACTCAACAACAATAGTATGCAGGAAGTTTCAAGCTTGTCTATAGACAAAAAGGGATCTTCTCTACAAGAGGTGGCTTAG 984 0.4431 MAGAFGEGMMHPIDTVKTRIQSQAILRGGQNQKTIIQMVHTIWAADGLRGFYRGITPGLTGSLATGATYFGVIESTKKWIEESHPSLEGHWAHFIAGSVGDTLGSFVYVPCEVMKQRMQVQGTKTTWSSVIINGTARTRPGPQMYGYYAGMFQAGCSIWKEQGLKGLYAGYWSTLARDVPFSGLMVTSYEALKDLAEHGKQKWIPNSDYNVNSSVEGLVLGGLAGGFSAYLTTPLDVIKTRLQVQGSNSSYNGWLDAIHRIWMTEGVKGMFRGSIPRIVWYIPASALTFMAVEFLRDHFNGGLNNNSMQEVSSLSIDKKGSSLQEVA* 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0725 327 Gene3D Mitochondrial carrier domain 1 133 IPR023395 -
Vvi17g0725 327 Gene3D Mitochondrial carrier domain 134 316 IPR023395 -
Vvi17g0725 327 ProSiteProfiles Solute carrier (Solcar) repeat profile. 88 195 IPR018108 -
Vvi17g0725 327 FunFam Mitochondrial substrate carrier family protein 1 134 - -
Vvi17g0725 327 ProSiteProfiles Solute carrier (Solcar) repeat profile. 212 298 IPR018108 -
Vvi17g0725 327 PANTHER S-ADENOSYLMETHIONINE MITOCHONDRIAL CARRIER PROTEIN 1 302 - -
Vvi17g0725 327 FunFam Mitochondrial substrate carrier family protein 136 315 - -
Vvi17g0725 327 Pfam Mitochondrial carrier protein 90 196 IPR018108 -
Vvi17g0725 327 Pfam Mitochondrial carrier protein 215 300 IPR018108 -
Vvi17g0725 327 Pfam Mitochondrial carrier protein 1 82 IPR018108 -
Vvi17g0725 327 SUPERFAMILY Mitochondrial carrier 2 295 IPR023395 -
Vvi17g0725 327 ProSiteProfiles Solute carrier (Solcar) repeat profile. 1 79 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0725 Vvi-Chr17 8158122 8163474 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0725 1 296 EF-hand Containing Proteins AT2G35800 27.333 2.56e-31 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0725 - - vvi:100255234 661.759