Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0724 ATGGAGGTGAACTCCGAGAAAGGCGATCGTCGGCGACGCGTGGGCCTCGTCTACGATGATCGTATGTGTGAGCATGCCACAGCAGATGGTGATCCTCACCCCGAGAATCCCGATCGGATTAGGGCCATCTGGAAGAAGCTCGAAAGCGCTGGAATTCCTCAGAGATGTGTGGTTTTCAATGCTAAAGAAGCAGAAGATAAACATATACTATCAGTTCACAGCAATAATCATGTCAATTTGATTAAAAACATTAGCTCCAAACAATTTGATTCAAGAAGAAATAGGATTGCGTCAAAGTTTAATTCCATCTATATGAATGAAGGCTCATCGGAGGCTGCTTATCTTGCTGCTGGCTCTGTGATTGAGGTTGCTGAGAGGGTCGCCAAAGGGGAGTTGAGTTCTGCTTTTGCCATTGTTAGGCCTCCTGGACATCATGCAGAGCAAAATGAGCCAATGGGATTTTGTCTATACAACAATGTGGCTATTGCAACAAGTTTTCTCTTGAATGAAAGACCGGACATTAAAAAAATCCTGATTGTTGATTGGGATGTTCATCATGGTAATGGCACTCAAAAGATGTTCTGGAAGGATCCTCGAGTTCTATTTTTTTCTGTTCATAGGCATGAGTTTGGGAGTTTTTATCCCGCAAACGATGAAGGTTTTTATGCTATGACTGGAGAAGGACCAGGTGCTGGATACAATATAAATGTTCCTTGGGAGAATGGACGATGTGGTGATGCTGATTATCTCGCCGTTTGGGACCATATATTAATTCCTGTTGCCAAGGATTTTAATCCAGACATTGTTATAATCTCTGCAGGATTTGATGCAGCAATTGGTGATCCCTTGGGGGGGTGTCATGTCACACCATATGGATATTCTGTTATGTTGAAAAAGCTGATGGAGTTTTCTGAAGGAAAGATTATAATGGCATTAGAAGGTGGATACAATCTTGTCTCTTTAGCAAATTCAGTTCTTGCATGTGTTGAGGTTTTGCTAGAAGACAAGCCTATTGCTGGATCTTCAGAGGCCTATCCATTCGAGTCAACATGGCGTGTAATACAAGCAGTTCGCCAAGAATTGAGTGCATTCTGGCCAACTCTTGCAGATGAATTACCAAAGAAGCTAACCAGTTGTAAAGCATCTCCACTTCAGCTTCTGGTCGCAAGCTCTGATTCTGAAGATGAAAGTGACATAGATCTGCATATTAGAGCAGAAAATCTTGAGGCAGTTGTTCAGGATGGCCTTTCAAAACTGAAAGTTGATGAAGATAGTCATGATCTGGTGGCCACCTGGAGATCAGAGTTGTCAAAAATTGATGTTTGGTATGCCTCTTTTGGATCGAATATGTGGAAATCAAGATTTCTGTGCTACATTGAAGGTGGACAGTTGGAAGGTATGGAAAAGCGATGTTCCGGTTCAGTGGATAGAAACCCACCAAAAGAGATTATGTGGAAGACTGTCCCTCATCGTTTATTCTTTGGTCGTGATCATTCCAGCACATGGGGTCCTGGAGGGGTTGCTTTCCTTAATCCTGAAGAAAACAATCAGGACAGAGCTTACATTTGCCTATATAGAATTACGAGAATGCTTCAAGTTATGACATCAGTTCTCCTTTGTTTGATTTAG 1629 0.4223 MEVNSEKGDRRRRVGLVYDDRMCEHATADGDPHPENPDRIRAIWKKLESAGIPQRCVVFNAKEAEDKHILSVHSNNHVNLIKNISSKQFDSRRNRIASKFNSIYMNEGSSEAAYLAAGSVIEVAERVAKGELSSAFAIVRPPGHHAEQNEPMGFCLYNNVAIATSFLLNERPDIKKILIVDWDVHHGNGTQKMFWKDPRVLFFSVHRHEFGSFYPANDEGFYAMTGEGPGAGYNINVPWENGRCGDADYLAVWDHILIPVAKDFNPDIVIISAGFDAAIGDPLGGCHVTPYGYSVMLKKLMEFSEGKIIMALEGGYNLVSLANSVLACVEVLLEDKPIAGSSEAYPFESTWRVIQAVRQELSAFWPTLADELPKKLTSCKASPLQLLVASSDSEDESDIDLHIRAENLEAVVQDGLSKLKVDEDSHDLVATWRSELSKIDVWYASFGSNMWKSRFLCYIEGGQLEGMEKRCSGSVDRNPPKEIMWKTVPHRLFFGRDHSSTWGPGGVAFLNPEENNQDRAYICLYRITRMLQVMTSVLLCLI* 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0724 542 SUPERFAMILY Arginase/deacetylase 12 363 IPR023696 -
Vvi17g0724 542 Gene3D Histone deacetylase domain 7 384 IPR037138 -
Vvi17g0724 542 PRINTS Histone deacetylase superfamily signature 141 164 IPR000286 -
Vvi17g0724 542 PRINTS Histone deacetylase superfamily signature 266 276 IPR000286 -
Vvi17g0724 542 PRINTS Histone deacetylase superfamily signature 176 191 IPR000286 -
Vvi17g0724 542 PANTHER HISTONE DEACETYLASE 9-RELATED 13 384 IPR017320 GO:0000118|GO:0004407|GO:0006325|GO:0016575
Vvi17g0724 542 Gene3D - 432 530 - -
Vvi17g0724 542 FunFam Histone deacetylase 15 7 382 - -
Vvi17g0724 542 Pfam Histone deacetylase domain 33 331 IPR023801 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0724 Vvi-Chr17 8144988 8154333 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0724 K11406 - vvi:100250074 1082.78