Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0720 ATGTTGGTTCAGCTTCCTCGCTTAACGAACTCTCTCCGAGACCCCTTCGATGTCGACCATGCCTATCTCCAACGCAAACTCATCCTCCAAAACCACAACCCTCGCAGTGATGCCAATTCGGTTGAGGAATCAGAGCTTGCACGGAAGATAGTTCATGGGTGGGACGAAGCTTCCATTGAAGTGTGTCAAGCATATAAACACTTTATTGCTGCAGTGGTTGAGTTGATAGATGGTGAAGTGGCCTCAGAATATTTCCGTGAGGTAGCGTTATTGGTTTATAATCTTTTTACAGGCCCCAGAGATGAGTATGAAGATGATACGAGGATTGCCGAGAAAAAGTTGGAATTGCAAAAACTTCTTGGTTATGTGGTCTCAGATGCTAATCTGCAGAAAGTTGCCTCTCTAGCACAGAGGCTTTTCAATTTGCAGCCTAACAACCTTGTGACTGGACTTGTTCATGAAAGGCAAGTACATGGGAGCAGTGATGATGTGGAATTTGGTGCTAACCTTGCTTTCCAAGCACCTTCTCGGTTTTTGGTGGATGCATCTTTGGAAGATGAGGAATTTTTGGGGGAGGAAAGTGCTCCACCTTCTGCAGGACGTGATAGATGGTATGATCATACTGCCTCTACACATGATCATTCTGCTGTTGACCGGCGGAACTTCACTTTGAGATGGTTAAGAGATGCTTGTGATGGAATAGTCAGAGGCAGTACTTCACAGCTTTCCCAAGATGAATTAGCAATGGCCATTTGCCGGGTGCTTGATTCGGACAAACCTGGTGAGGAGATAGCTGGTGACTTGTTGGATCTTGTCGGGGATAATGCATTTGAAATGGTTCAAGATATTATATCGCATCGAAAGGACCTTACTGATGCTATACATCATGGCTTGCTGGTGCTGAAATCTGAAAAAGCAGCTTCGAATTCACAATCACGTATGCCTAGTTATGGCACTCAGGTTACCGTTCAAACAGAGTCTGAGCGGCAGATTGATAAACTTCGGCGCAAAGAGGAAAAACGACATAGACGTGGAAGTGAATATGGGGTTGGAGACAATTTGTTGGCTGCAAATTTTTCTTCTTTACTTGAAGCTAGTGAAAACAAGAGTCCATTTGATGGTCTAATTGGGAGTGGAGAAGGCCCACACTCATTACCAGTTACTGCCCTTCCTCAAGGAACTCTCAGGAAGCATTACAAGGGTTATGAAGAAGTCATAGTCCCACCAACTCCAACAGCACAATTGAAACCTGGAGAAAAACTGATTGATATAAAGGAGTTAGATGACTTTGCTCAAGCTGCTTTCCATGGCTACAAATCACTTAACCGTATCCAGAGCCGGATTTTCCAAACTGTTTATTACACTAATGAGAATGTACTGGTTTGTGCTCCAACAGGAGCTGGCAAAACGAATATAGCTATGATTGCTATTCTACATGAGATTGGCCAGCACTTCAAGGATGGCTACTTGCATAAAAATGAATTTAAGATAGTTTATGTTGCTCCAATGAAGGCATTAGCTGCAGAGGTCACATCAACATTTAGTCATCGTTTATCTCCATTGAATATATCCGTAAGAGAACTTACTGGAGACATGCAACTTTCTAAGTATGAGCTTGAAGAAACTCAGATGATAGTGACCACACCTGAGAAATGGGATGTCATTACTCGTAAGAGCAGTGACATGTCACTCTCGATGCTCGTAAAGCTCTTAATTATTGATGAAGTGCATCTTTTGAATGATGATAGAGGGGCGGTAATAGAGGCATTAGTTGCTCGGACCCTTCGACAGGTTGAGTCAACACAGACCATGATACGTATCGTTGGCCTTTCGGCCACTCTACCCAATTATTTGGAGGTTGCTCAGTTTCTGAGGGTGAATCCTGAGGCAGGACTATTCTACTTTGATTCTAGCTATCGACCAGTGCCTCTTGCACAACAGTATATTGGAATTAGTGAGCAGAACTTTCTTGCTCGCACTGAACTTTTAAATGAGATATGCTATAATAAGGTTGTTGATTCATTGAGGCAAGGGCATCAAGCAATGGTTTTTGTTCATTCACGAAAAGACACTGCAAAAACTGCTGAGAAACTGATTGAGCTTGCGCGAAGGAATGATGATGTAGAGCTTTTTAAGAATGAAACACATCCACAGTTTTCCTTAGTCAAGATGGAAGTCATGAAATCCAGAAACAAAGATTTGGTTGAATATTTTGGGTCTGGGGTTGGTATTCACCATGCTGGTATGTTACGTGCTGATAGAGGTCTAACTGAGCGGCTTTTCTCTGATGGCCTTTTGAAGGTTCTTGTTTGCACAGCAACTTTGGCATGGGGAGTAAATCTACCTGCTCATACTGTTGTGATTAAGGGGACTCAATTATATGATCCAAAGGCAGGTGGATGGCGAGATCTGGGCATGCTTGATGTGATGCAGATCTTTGGACGTGCTGGAAGACCTCAGTTTGACAAAAGTGGTGAAGGCATCATAATAACATCTCATGAAAAACTAGCCTACTATCTACGGTTACTGACAAGTCAACTACCCATAGAAAGTCAGTTTATTAGCTCCTTGAAAGATAATTTGAATGCAGAAGTGGCATTGGGTACTGTTACAAATGTTAAGGAAGCTTGTGCATGGCTTGGGTATACATACCTTTTTATAAGGATGAGGCTGAATCCTTTGGCATATGGCATTGGATGGGATGAGGTCATTGCAGATCCTTCTTTGAGTTTAAAGCAGAGAGCTTTTGTAACAGATGCTGCACGTGCACTAGACAAAGCAAAAATGATGCGGTTTGATGAGAAAAGTGGGAACTTTTACTGTACAGAGCTTGGTCGAATTGCTAGCCACTTTTATATTCAATACTCCAGTGTTGAAACTTACAATGAAATGTTGAGGCGCCACATGAATGACAGTGAGGTAATTGACATGGTAGCCCATTCTTCTGAGTTTGAAAACATTGTTGTTCGAGAGGAGGAACAAAATGAGCTAGAAATGTTGGCACGTACATCATGCCCCTTAGAAATTAAGGGTGGTCCTTCAAATAAACATGGAAAAATTTCAATTCTTATTCAGTTGTACATATCTCGGGGTTCAATAGATAGTTTTTCATTGATTTCTGATGCTGCATACATAAGCGCAAGTTTGGCTCGCATCATGCGAGCGTTATTTGAAATTTGTTTGCGCAGAGGGTGGTGTGAGATGTGTTCCTTCATGTTGGATTACTGCAAGGCTGTGGATCGCCAAGTTTGGCCACATCAACATCCCCTCAGACAATTTGACAAGGATCTTTCATCAGACATACTGCGGAAGCTTGAAGATCGTGGGGCTGACTTAGATCGCCTCTACGATATGCAGGAAAAAGACATTGGTGCCCTGATTCGTTATGCATCTGGTGGAAAGTTGGTTAAGCAATACTTAGGATATTTCCCATCAATCCAGTTGTCCGCAACTGTAAGTCCAATCACCAGAACTGTTTTGAAGATTGATCTGCTCATAGCTTCAGACTTCGTATGGAAGGATCGTTTTCATGGTGCAGCACAACGTTGGTGGATCCTGGTTGAGGACTCTGACAATGACCACATCTACCACTCTGAGAATTTCACACTGACAAAGCGGATGGCAAGAGGGGAGCCTCAGAAGCTTTCGTTCACTGTGCCAATATTTGAACCACATCCACCTCAATACTACATTCGTGCTGTTTCTGATTCTTGGTTGCAGGCAGAGGCCTTCTACACTATATCTTTCCATAATCTAGCACTGCCAGAGGCTCGTACTTCCCACACAGAACTTCTAGATTTGAAACCTCTTCCTGTGACTTCACTTGGCAACAGAACGTATGAACTCTTGTACAAATTTTCACACTTCAATCCCATTCAAACACAGACTTTTCATGTCCTGTATCACACAGACAACAATGTCCTCTTAGGAGCTCCTACTGGAAGTGGAAAAACGATATCTGCTGAGCTTGCTATGCTTCATCTCTTCAACACTCAGCCTGATATGAAGGTTATTTACATAGCACCTCTGAAGGCTATTGTTCGGGAAAGAATGATTGATTGGAAAAAGCGTATTGTCTCTCAACTTGGAAAAGAGATGGTTGAGATGACTGGGGATTATACTCCAGACTTGATGGCCCTCATGTCAGCAGATATCATAATTTCTACGCCCGAAAAATGGGACGGTATCAGTCGTAACTGGCATAATCGAGGCTATGTTAAAAAGGTCGGGCTTATGATTTTGGATGAGATCCACTTACTTGGAGCTGATCGTGGACCCATTCTTGAGGTTATTGTTTCAAGGATGAGATACATATCATCACAAACAGAGAGGACAGTGCGGTTTGTAGGACTTTCAACTGCTTTAGCAAATGCAGGTGACTTGGCTGACTGGTTGGGTGTTGGTGAAATTGGACTCTTCAATTTCAAGCCTAGTGTGAGGCCTGTCCCTCTTGAAGTTCATATCCAGGGATACCCTGGTAAATTTTACTGCCCAAGGATGAATAGCATGAATAAACCAGCATATGCTGCCATTTGCACCCATTCTCCTATGAAACCAGTTCTTATATTTGTTTCATCTCGTCGCCAGACAAGGCTTACTGCACTAGATCTTATTCAGTTTGCAGCTTCGGATGAACACCCAAGGCAATTTCTGAGCATGCCAGAAGAAGCACTACAGATGGTTCTTTCTCAGGTTACTGATCAGAACCTAAGGCACACCTTGCAATTTGGCATTGGGCTACACCATGCAGGATTAAATGACAAAGACAGATCTCTGGTTGAGGAGCTTTTTTCAAACAACAAGATTCAGGTCTTGGTTTGTACTAGCACACTAGCCTGGGGTGTAAACCTTCCAGCTCATCTAGTTATAATCAAGGGAACAGAGTTTTATGACGGAAAGGCCAAAAGATATGTTGACTTTCCTATCACAGATATCTTGCAAATGATGGGGCGTGCAGGCCGACCACAATATGACCAACATGGGAAAGCAGTCATTCTTGTTCATGAACCTAAAAAGAGCTTTTATAAAAAGTTCCTTTATGAACCATTTCCAGTTGAGAGTAGTCTGAGGGAGCACTTTCATGATCACATCAATGCAGAGATAGTTTCTGGAACAATTTGTCATAAAGAGGACGCCATGCATTATCTCACCTGGACTTATTTATTTCGCAGACTAATGGTTAACCCAGCTTATTATGGCTTAGATGATACAGACCCTGAGATTCTAAGTTCATACTTGTCACGGTTAGTGCAAAACACTTTCGAGGATCTGGAAGACAGTGGATGCATCCAGATGAATGAAGATAATGTCGAGCCTATGATGTTAGGTTCAATAGCATCTCAGTATTACCTTAGCTACATGACTGTGTCAATGTTTGGTTCTAACATAGGCCCTGATACATCACTTGAAGTTTTCCTTCATATTCTATCTGGTGCTTCTGAGTATGATGAGCTTCCTGTGCGGCATAATGAGGAAAATTACAATGAAGCACTATCTGCGAAAGTTCCATGTATGGTGGATAAGAATCGCCTAGATGACCCACATGTCAAAGCAAATTTGCTATTTCAGGCACATTTTTCTCAGCTAGAGTTGCCCATCAGTGACTATGTCACAGACTTGAAGTCAGTATTGGATCAAAGTATACGTATTGTGCAGGCAATGATAGATATATGTGCTAACAGTGGATGGCTTTCAAGCACAATTACTTGTATGCATCTCTTGCAAATGATCATGCAGGGTTTATGGTTTAGTGAGACTTCTTGCCTATGGATGTTGCCCTGCATGACTAATGAACTTGAGGGTTCACTGACCAGAAGAGGAATCTCAAAAGTGCAGCAACTGTTAGATCTTCCCAAGGCAACTTTGCAGGCTTTGATTAATAATTTCCCTGCTTCAAGATTATATCAGGATCTGCAGTATTTCCCCCATGTTCGTGTGATATTAAAGCTTCAGAGAAAGGACGCTAATGGTGGAAAGTCTCCCACTCTGAATATTAGATTGGAAAGAATGAATTCCAAGCGGAAATCCTTGAGAGCTTTTGCCCCTCGATTCCCAAAGGTCAAAAACGAAGCTTGGTGGCTGGTTCTTGGTAACACCTCAACCTCCGAACTCTTTGCTCTGAAGAGAGTTAGTTTTGCTGACCGCTTAGTCACCCACATGAAGTTACCATCATCAACTCCAACCAATCTCCAGGGAATGAAGCTGATTTTAGTTTCAGATTGTTATATTGGGTTTGAACAAGAGCACTCCATCGAAGAACTTGATGGATCTCAGCAACTGTAA 6282 0.4241 MLVQLPRLTNSLRDPFDVDHAYLQRKLILQNHNPRSDANSVEESELARKIVHGWDEASIEVCQAYKHFIAAVVELIDGEVASEYFREVALLVYNLFTGPRDEYEDDTRIAEKKLELQKLLGYVVSDANLQKVASLAQRLFNLQPNNLVTGLVHERQVHGSSDDVEFGANLAFQAPSRFLVDASLEDEEFLGEESAPPSAGRDRWYDHTASTHDHSAVDRRNFTLRWLRDACDGIVRGSTSQLSQDELAMAICRVLDSDKPGEEIAGDLLDLVGDNAFEMVQDIISHRKDLTDAIHHGLLVLKSEKAASNSQSRMPSYGTQVTVQTESERQIDKLRRKEEKRHRRGSEYGVGDNLLAANFSSLLEASENKSPFDGLIGSGEGPHSLPVTALPQGTLRKHYKGYEEVIVPPTPTAQLKPGEKLIDIKELDDFAQAAFHGYKSLNRIQSRIFQTVYYTNENVLVCAPTGAGKTNIAMIAILHEIGQHFKDGYLHKNEFKIVYVAPMKALAAEVTSTFSHRLSPLNISVRELTGDMQLSKYELEETQMIVTTPEKWDVITRKSSDMSLSMLVKLLIIDEVHLLNDDRGAVIEALVARTLRQVESTQTMIRIVGLSATLPNYLEVAQFLRVNPEAGLFYFDSSYRPVPLAQQYIGISEQNFLARTELLNEICYNKVVDSLRQGHQAMVFVHSRKDTAKTAEKLIELARRNDDVELFKNETHPQFSLVKMEVMKSRNKDLVEYFGSGVGIHHAGMLRADRGLTERLFSDGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDVMQIFGRAGRPQFDKSGEGIIITSHEKLAYYLRLLTSQLPIESQFISSLKDNLNAEVALGTVTNVKEACAWLGYTYLFIRMRLNPLAYGIGWDEVIADPSLSLKQRAFVTDAARALDKAKMMRFDEKSGNFYCTELGRIASHFYIQYSSVETYNEMLRRHMNDSEVIDMVAHSSEFENIVVREEEQNELEMLARTSCPLEIKGGPSNKHGKISILIQLYISRGSIDSFSLISDAAYISASLARIMRALFEICLRRGWCEMCSFMLDYCKAVDRQVWPHQHPLRQFDKDLSSDILRKLEDRGADLDRLYDMQEKDIGALIRYASGGKLVKQYLGYFPSIQLSATVSPITRTVLKIDLLIASDFVWKDRFHGAAQRWWILVEDSDNDHIYHSENFTLTKRMARGEPQKLSFTVPIFEPHPPQYYIRAVSDSWLQAEAFYTISFHNLALPEARTSHTELLDLKPLPVTSLGNRTYELLYKFSHFNPIQTQTFHVLYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQPDMKVIYIAPLKAIVRERMIDWKKRIVSQLGKEMVEMTGDYTPDLMALMSADIIISTPEKWDGISRNWHNRGYVKKVGLMILDEIHLLGADRGPILEVIVSRMRYISSQTERTVRFVGLSTALANAGDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKFYCPRMNSMNKPAYAAICTHSPMKPVLIFVSSRRQTRLTALDLIQFAASDEHPRQFLSMPEEALQMVLSQVTDQNLRHTLQFGIGLHHAGLNDKDRSLVEELFSNNKIQVLVCTSTLAWGVNLPAHLVIIKGTEFYDGKAKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPKKSFYKKFLYEPFPVESSLREHFHDHINAEIVSGTICHKEDAMHYLTWTYLFRRLMVNPAYYGLDDTDPEILSSYLSRLVQNTFEDLEDSGCIQMNEDNVEPMMLGSIASQYYLSYMTVSMFGSNIGPDTSLEVFLHILSGASEYDELPVRHNEENYNEALSAKVPCMVDKNRLDDPHVKANLLFQAHFSQLELPISDYVTDLKSVLDQSIRIVQAMIDICANSGWLSSTITCMHLLQMIMQGLWFSETSCLWMLPCMTNELEGSLTRRGISKVQQLLDLPKATLQALINNFPASRLYQDLQYFPHVRVILKLQRKDANGGKSPTLNIRLERMNSKRKSLRAFAPRFPKVKNEAWWLVLGNTSTSELFALKRVSFADRLVTHMKLPSSTPTNLQGMKLILVSDCYIGFEQEHSIEELDGSQQL* 2094
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0720 2093 FunFam RNA helicase, activating signal cointegrator 1 1143 1252 - -
Vvi17g0720 2093 Pfam DEAD/DEAH box helicase 443 616 IPR011545 GO:0003676|GO:0005524
Vvi17g0720 2093 Gene3D - 1780 1916 - -
Vvi17g0720 2093 FunFam U5 small nuclear ribonucleoprotein helicase 942 1084 - -
Vvi17g0720 2093 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1298 1473 IPR014001 -
Vvi17g0720 2093 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1504 1713 IPR001650 -
Vvi17g0720 2093 FunFam DExH-box ATP-dependent RNA helicase DExH14 1975 2086 - -
Vvi17g0720 2093 MobiDBLite consensus disorder prediction 309 345 - -
Vvi17g0720 2093 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 389 625 IPR027417 -
Vvi17g0720 2093 FunFam U5 small nuclear ribonucleoprotein helicase 1085 1141 - -
Vvi17g0720 2093 FunFam RNA helicase, activating signal cointegrator 1 429 640 - -
Vvi17g0720 2093 Gene3D - 1086 1140 - -
Vvi17g0720 2093 CDD DEXHc_ASCC3_2 1288 1476 - -
Vvi17g0720 2093 MobiDBLite consensus disorder prediction 328 345 - -
Vvi17g0720 2093 Gene3D - 1686 1779 IPR036388 -
Vvi17g0720 2093 SUPERFAMILY Sec63 N-terminal domain-like 1805 1961 - -
Vvi17g0720 2093 FunFam U5 small nuclear ribonucleoprotein helicase 1686 1779 - -
Vvi17g0720 2093 Gene3D - 641 843 IPR027417 -
Vvi17g0720 2093 FunFam Activating signal cointegrator 1 complex subunit 3 1481 1685 - -
Vvi17g0720 2093 CDD DEXHc_ASCC3_1 440 636 - -
Vvi17g0720 2093 CDD SF2_C_Ski2 640 831 - -
Vvi17g0720 2093 SMART helicmild6 1564 1656 IPR001650 -
Vvi17g0720 2093 SMART helicmild6 732 820 IPR001650 -
Vvi17g0720 2093 Pfam Sec63 Brl domain 1772 2084 IPR004179 -
Vvi17g0720 2093 PIRSF BRR2 24 2091 - -
Vvi17g0720 2093 SMART ultradead3 437 648 IPR014001 -
Vvi17g0720 2093 SMART ultradead3 1285 1489 IPR014001 -
Vvi17g0720 2093 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 450 632 IPR014001 -
Vvi17g0720 2093 Pfam DEAD/DEAH box helicase 1291 1455 IPR011545 GO:0003676|GO:0005524
Vvi17g0720 2093 Pfam Helicase conserved C-terminal domain 1569 1654 IPR001650 -
Vvi17g0720 2093 Pfam Helicase conserved C-terminal domain 676 818 IPR001650 -
Vvi17g0720 2093 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1475 1684 IPR027417 -
Vvi17g0720 2093 FunFam U5 small nuclear ribonucleoprotein helicase 641 843 - -
Vvi17g0720 2093 CDD SF2_C_Ski2 1480 1668 - -
Vvi17g0720 2093 SUPERFAMILY E set domains 1992 2084 IPR014756 -
Vvi17g0720 2093 Pfam Sec63 Brl domain 941 1248 IPR004179 -
Vvi17g0720 2093 Gene3D C2 domain 1975 2086 IPR035892 -
Vvi17g0720 2093 SUPERFAMILY Sec63 N-terminal domain-like 969 1144 - -
Vvi17g0720 2093 SMART Sec63_2 1772 2086 IPR004179 -
Vvi17g0720 2093 SMART Sec63_2 941 1249 IPR004179 -
Vvi17g0720 2093 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 667 865 IPR001650 -
Vvi17g0720 2093 Gene3D C2 domain 1143 1252 IPR035892 -
Vvi17g0720 2093 FunFam U5 small nuclear ribonucleoprotein helicase 850 941 - -
Vvi17g0720 2093 SUPERFAMILY "Winged helix" DNA-binding domain 1684 1784 IPR036390 -
Vvi17g0720 2093 FunFam Activating signal cointegrator 1 complex subunit 1253 1480 - -
Vvi17g0720 2093 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 635 848 IPR027417 -
Vvi17g0720 2093 Gene3D - 429 640 IPR027417 -
Vvi17g0720 2093 SMART AAA_5 1303 1536 IPR003593 GO:0016887
Vvi17g0720 2093 SMART AAA_5 455 636 IPR003593 GO:0016887
Vvi17g0720 2093 SUPERFAMILY "Winged helix" DNA-binding domain 848 953 IPR036390 -
Vvi17g0720 2093 FunFam Activating signal cointegrator 1 complex subunit 3 1779 1915 - -
Vvi17g0720 2093 Gene3D - 942 1084 - -
Vvi17g0720 2093 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1174 1473 IPR027417 -
Vvi17g0720 2093 Gene3D - 1481 1685 IPR027417 -
Vvi17g0720 2093 Gene3D - 850 940 IPR036388 -
Vvi17g0720 2093 PANTHER DNA POLYMERASE THETA, PUTATIVE (AFU_ORTHOLOGUE AFUA_1G05260)-RELATED 277 1159 - -
Vvi17g0720 2093 MobiDBLite consensus disorder prediction 309 327 - -
Vvi17g0720 2093 Gene3D - 1253 1480 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0720 Vvi-Chr17 8047521 8103821 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0720 K18663 - vvi:100251846 4174.78