Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0716 ATGAATCCAGAGAAATTCACCCACAAGACAAATGAGACTCTTGCTGGGGCTCATGAGCTTGCTATGAACTCTGGCCATGCTCAGCTCACACCACTTCACGTTGCTGTGGCTTTGATAACTGATCCCAATGGCATCCTCCGGCAAGCCATAATCGGTGCTGGTGGAAATGAGGAGGCTGCCAACTCTGTTGAAAGAGTCTTCAATAAAGCTCTGAAGAAACTCCCATCTCAGAGTCCTCCTCCAGATGAAATCCCAGTAAGCACTACTCTAATCAAAGTGGTTCGAAGAGCCCAATCTTCACAAAAGTCACGGGGTGACACCCATTTAGCAGTTGATCAATTGATTCTTGGCCTTCTTGAGGATTCCCAAATTGGTGATTTGCTTAAAGAAGCCGGGGTTAGTACTTCTAGAGTGAAATCTGAGGTTGAGAAGCTTCGAGGGAAAGAAGGTAAGAAGGTGGAAAGTGCTTCTGGGGACACCACATTCCAGGCATTGAAGACTTATGGGCGTGACCTTGTTGAGCAAGCTGGAAAGCTTGATCCTGTCATTGGCCGGGACGAAGAGATTCGGAGGGTCATCAGGATTCTTTCAAGGAGGACCAAGAACAACCCTGTTCTTATTGGAGAACCAGGTGTGGGTAAGACTGCTGTTGTTGAAGGATTAGCTCAGAGAATTGTAAGAGGGGACGTTCCCAGTAATCTCGCTGAAGTGAGGCTTATAGCATTGGATATGGGTGCTTTGGTTGCTGGGGCAAAATATAGAGGAGAATTCGAGGAGAGGTTGAAATCTGTTTTGAAAGAAGTGGAAGAGGCAGAAGGGAAAGTGATTTTATTCATTGATGAAATTCACCTTGTTCTTGGTGCTGGTCGGACTGAAGGATCTATGGATGCTGCTAACTTGTTTAAGCCCATGCTTGCCAGAGGTCAGCTACGCTGCATCGGAGCAACGACCCTTGAGGAATACAGAAAGTATGTTGAGAAAGATGCCGCTTTTGAGAGGCGGTTCCAGCAAGTTTATGTAGCTGAGCCCAGCGTCCCTGACACAATAAGCATTCTTCGAGGGCTAAAAGAAAGGTATGAAGGGCATCATGGTGTTCGAATTCAGGACCGAGCTCTTGTAGTTGCAGCCCAACTATCAAGCCGATACATCACTGGCCGACATCTGCCAGACAAGGCAATCGACCTGGTTGATGAAGCTTGCGCCAATGTGAGAGTTCAACTTGATAGCCAGCCCGAAGAAATCGACAATTTGGAAAGGAAGAGAATGCAATTAGAAGTTGAACTTCATGCTCTTGAAAAGGAGAAGGACAAAGCCAGTAAAGCTCGTCTTGTTGAAGTCCGCAGAGAGCTTGACGACTTGAGGGACAAGCTTCAACCCTTGATGATGAAGTACAAAAAGGAGAAAGAAAGGATTGATGAGCTTCGCAGGCTAAAACAGAAAAGAGAGGAGCTCTTGTTTGCTTTACAAGAGGCTGAAAGAAGATATGATTTAGCCAGAGCTGCTGATTTGCGATATGGGGCAATTCAAGAAGTGGAGGCTGCTATAGCAAACCTTGAAGGAACCACTGATGAGAACATGATGTTAACGGAGACTGTTGGGCCTGAGCAGATTGCTGAGGTGGTGAGCCGCTGGACTGGCATCCCTGTCACTAGGCTTGGACAAAATGATAAAGAAAGGTTAATTGGGCTTGCGGAGAGGCTGCATCAGAGAGTGGTGGGACAGGATCAGGCAGTCAGTGCTGTGGCAGAGGCTGTCTTGAGATCGAGGGCTGGGTTAGGAAGGCCACAACAACCCACTGGTTCGTTCCTCTTCTTGGGTCCAACTGGTGTTGGTAAGACTGAGCTTGCCAAGGCCCTGGCTGAACAGCTCTTTGATGATGAAAATCTTTTGGTGAGAATTGACATGTCCGAGTATATGGAGCAGCATTCAGTTTCAAGATTGATTGGGGCTCCTCCTGGATATGTTGGACATGATGAAGGTGGGCAACTCACAGAGGCAGTAAGAAGGAGGCCTTATAGTGTTGTACTGTTCGATGAAGTAGAGAAAGCACATATCGCCGTATTCAATACCCTCCTCCAGGTTTTAGACGATGGAAGGTTAACTGATGGCCAAGGCCGCACTGTAGACTTCACAAACACAGTGATCATCATGACTTCAAACCTTGGAGCTGAGCATCTCCTCTCGGGTTTAGTAGGCAAGTGTACAATGCAAGATGCTCGTGACCGGGTGATGCAGGAGGTGAGAAGGCACTTCAGGCCAGAGTTGCTTAACCGGCTGGATGAAATTGTGGTATTTGATCCCCTCTCACATGATCAACTGAGAAAGGTTGCCAGGCTACAAATGAAGGACGTTGCAAGCCGCTTGGCAGAGAGGGGCATTGCTCTGGCTGTGACTGATGCAGCATTGGATGTTGTTCTAGCAGAGAGTTATGATCCGGTTTACGGTGCAAGACCCATTAGGAGATGGCTGGAGAAGAAGGTGGTGACTGAGCTATCAAAGATGCTCATAAGGGAGGAGATCGATGAAAACTCAACTGTTTATATAGATGCGGGAGTGTCAGGAAAGGGGTTGGCGTACCGAGTAGAAAACAATGGGGGGCTGGTGAATGCATCCACCGGACAAAAGTCAGACGTGTTGATTCGGATCCCAAACGGGCCAAGAAGCGATGCTGCCCAAGCGGTGAAGAAGATGAAGATCGAAGAAATAGAAGACGAAGAGGATGAGATGGATCTATAA 2736 0.4762 MNPEKFTHKTNETLAGAHELAMNSGHAQLTPLHVAVALITDPNGILRQAIIGAGGNEEAANSVERVFNKALKKLPSQSPPPDEIPVSTTLIKVVRRAQSSQKSRGDTHLAVDQLILGLLEDSQIGDLLKEAGVSTSRVKSEVEKLRGKEGKKVESASGDTTFQALKTYGRDLVEQAGKLDPVIGRDEEIRRVIRILSRRTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLAEVRLIALDMGALVAGAKYRGEFEERLKSVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARGQLRCIGATTLEEYRKYVEKDAAFERRFQQVYVAEPSVPDTISILRGLKERYEGHHGVRIQDRALVVAAQLSSRYITGRHLPDKAIDLVDEACANVRVQLDSQPEEIDNLERKRMQLEVELHALEKEKDKASKARLVEVRRELDDLRDKLQPLMMKYKKEKERIDELRRLKQKREELLFALQEAERRYDLARAADLRYGAIQEVEAAIANLEGTTDENMMLTETVGPEQIAEVVSRWTGIPVTRLGQNDKERLIGLAERLHQRVVGQDQAVSAVAEAVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQHSVSRLIGAPPGYVGHDEGGQLTEAVRRRPYSVVLFDEVEKAHIAVFNTLLQVLDDGRLTDGQGRTVDFTNTVIIMTSNLGAEHLLSGLVGKCTMQDARDRVMQEVRRHFRPELLNRLDEIVVFDPLSHDQLRKVARLQMKDVASRLAERGIALAVTDAALDVVLAESYDPVYGARPIRRWLEKKVVTELSKMLIREEIDENSTVYIDAGVSGKGLAYRVENNGGLVNASTGQKSDVLIRIPNGPRSDAAQAVKKMKIEEIEDEEDEMDL* 912
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0716 911 Coils Coil 407 501 - -
Vvi17g0716 911 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 647 665 IPR001270 GO:0005524
Vvi17g0716 911 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 676 694 IPR001270 GO:0005524
Vvi17g0716 911 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 709 723 IPR001270 GO:0005524
Vvi17g0716 911 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 602 620 IPR001270 GO:0005524
Vvi17g0716 911 Gene3D - 151 344 IPR027417 -
Vvi17g0716 911 Gene3D - 345 545 IPR027417 -
Vvi17g0716 911 Pfam ATPase family associated with various cellular activities (AAA) 205 318 IPR003959 GO:0005524|GO:0016887
Vvi17g0716 911 SUPERFAMILY Double Clp-N motif 4 158 IPR036628 -
Vvi17g0716 911 Gene3D - 768 863 - -
Vvi17g0716 911 ProSitePatterns Chaperonins clpA/B signature 2. 632 650 IPR028299 -
Vvi17g0716 911 CDD AAA 183 338 - -
Vvi17g0716 911 Pfam Clp amino terminal domain, pathogenicity island component 97 147 IPR004176 -
Vvi17g0716 911 Pfam Clp amino terminal domain, pathogenicity island component 17 61 IPR004176 -
Vvi17g0716 911 PANTHER ATP-DEPENDENT CLP PROTEASE 7 865 - -
Vvi17g0716 911 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 161 546 IPR027417 -
Vvi17g0716 911 Coils Coil 254 274 - -
Vvi17g0716 911 Pfam AAA lid domain 345 444 IPR041546 -
Vvi17g0716 911 ProSitePatterns Chaperonins clpA/B signature 1. 296 308 IPR018368 GO:0005524
Vvi17g0716 911 ProSiteProfiles Clp repeat (R) domain profile. 3 148 IPR004176 -
Vvi17g0716 911 SMART AAA_5 598 769 IPR003593 GO:0016887
Vvi17g0716 911 SMART AAA_5 200 345 IPR003593 GO:0016887
Vvi17g0716 911 FunFam ATP-dependent chaperone ClpB 1 149 - -
Vvi17g0716 911 FunFam ATP-dependent chaperone ClpB 345 545 - -
Vvi17g0716 911 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 547 848 IPR027417 -
Vvi17g0716 911 Gene3D - 551 767 IPR027417 -
Vvi17g0716 911 CDD RecA-like_ClpB_Hsp104-like 559 765 - -
Vvi17g0716 911 SMART ClpB_D2_small_2 768 859 IPR019489 -
Vvi17g0716 911 FunFam ATP-dependent Clp protease subunit 551 766 - -
Vvi17g0716 911 Pfam C-terminal, D2-small domain, of ClpB protein 768 848 IPR019489 -
Vvi17g0716 911 Gene3D - 3 149 IPR036628 -
Vvi17g0716 911 FunFam Chaperone clpB 1, putative 153 344 - -
Vvi17g0716 911 Pfam AAA domain (Cdc48 subfamily) 598 762 IPR003959 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0716 Vvi-Chr17 7995181 7998495 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0716 K03695 - vvi:100232966 1678.69