Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0692 ATGCAGTATAGAATGCCTGATGCTTATGATCAGGAAGGGGGTGTAAATCAGGAGAAGAGATTTTCTGTGGCTTTGCAGCGTTATAGGGACTCAAGTGCAAATGATAAGATGAATCCATTTGCAGAACAAGAGGCATGGGAGGAGCATCAAATTGGAAAGGCAACCTTAAAATTTGGTTCAAAAGATAAAAACCAAAAGTCAGATGACTATCAGTTAGTATTTGAGGACCAGATTGAATTCATCAAGGCATCTGTGATGGATGGTGACAAGTTTGAAGATGGTTTATTTGCTGAGTCTCATGATGATTCTGTCGCAAAATCAGAATTAGAGAAACTTCAGGAAGATAGAAAAATGTTGCCTATCTATCCATATCGAGATGAATTGCTCAAAGCAGTAGATGATCATCAGATTCTTGTTATTGTTGGGGAGACTGGTTCTGGGAAAACCACACAGATACCTCAATATCTTCATGAATCTGGGTACACAAAGCGTGGAAAGGTTGGATGTACCCAGCCACGGCGAGTTGCTGCTATGAGTGTTGCAGCTCGAGTTTCTCAGGAAATGGGCGTTAAACTTGGGCATGAGGTTGGCTATTCTATCCGTTTTGAAGATTGCACGTCAGAAAAGACGGTTCTGAAATATATGACTGATGGAATGTTATTGAGAGAATTCCTTGGTGAACCAGATCTGGCAAGCTACAGCGTGGTGATGGTGGATGAGGCCCATGAAAGAACGCTCTCAACTGATATTCTATTTGGATTAGATATTGCTCGTTTTAGACCCGATCTTAAGTTGCTTATTTCAAGTGCGACTCTTGATGCAGAAAAGTTCAGTGATTATTTTGATTCTGCTCCAATTTTTAAAATTCCTGGGAGGCGGTATCCTGTTGAAATACATTATACTAAAGCACCAGAGGCAGATTACTTAGATGCAGCCATTGTCACTGCACTTCAAATTCATGTGACTCAACCACCTGGTGATATTTTGGTGTTCCTCACTGGTCAAGAGGAAATTGAAACAGCTGAGGAAATCATGAAGCACAGGACAAGGGGTTTAGGGACAAAGATTGCAGAGCTGATAATCTGCCCTATATATGCAAACCTGCCAACTGAGCTGCAGGCTAATATATTTGAACCCACTCCTGAAGGAGCACGTAAGGTTGTCCTGGCCACAAACATTGCAGAAACGTCATTGACAATCGATGGGATCAAGTATGTCATTGATCCAGGATTCTGTAAGATGAAATCTTATAATCCACGGACTGGCATGGAGTCATTACTAGTAAATCCCATCTCTAAAGCATCAGCCATGCAAAGGGCTGGTCGATCTGGACGAACTGGTCCTGGAAAGTGCTTCCGGTTGTATACTGCCTACAACTATTACAATGACTTGGAAGATAATACTGTCCCAGAAATACAAAGAACTAACCTTGCAAATGTTGTGCTCTCTCTCAAGAGCCTTGGTATCCATGATTTGCTTAATTTTGATTTTATGGACCCACCACCAGCTGAAGCTTTATTGAAAGCCCTAGAATTGCTCTATGCTCTAAGTGCCTTAAACAGACTTGGGGAGTTGACGAAGGTGGGGAGAAGGATGGCAGAATTCCCCCTTGATCCTATGCTCTCCAAGATGATAGTGGCAGCTGACAACTACAAGTGCTCAGATGAGATCATATCAATTGCTGCTATGCTTTCAGTGGGTAATTCAATCTTCTATCGCCCAAAGGACAAACAAGTCCATGCTGACAATGCAAGGATGAATTTTCACACTGGCAATGTTGGGGACCATATTGCATTGTTAAAGGTCTACAGTTCTTGGAAGGAAACTAACTACTCAACTCAGTGGTGCTATGAAAATTATATTCAGGTCAGGAGTATGAAACGTGCCAGAGATGTGAGAGACCAGTTGGAGGGGCTCTTGGAGAGGGTTGAAATTGAACTTGCATCCAACCCCAATGATTTAGATGCAATAAAGAAGTCTATAACAGCTGGTTTTTTTCCACACTCTGCAAGACTGCAGAAGAATGGATCTTATCGAACAGTTAAACACCCCCAGACTGTTCACATTCACCCAAGCTCGGGTTTAGCACAGGTGCTTCCAAGGTGGGTGATATACCATGAATTGGTTCTTACAACCAAGGAGTACATGAGACAGGTTACTGAACTAAAGCCAGAGTGGCTGGTGGAGATAGCTCCTCACTTCTACCAACTGAAAGATGTTGAAGACCCTGGATCAAAGAAAATGCCTCGAACTGAAGGACGTGCTGTGAAGGACTGA 2277 0.4256 MQYRMPDAYDQEGGVNQEKRFSVALQRYRDSSANDKMNPFAEQEAWEEHQIGKATLKFGSKDKNQKSDDYQLVFEDQIEFIKASVMDGDKFEDGLFAESHDDSVAKSELEKLQEDRKMLPIYPYRDELLKAVDDHQILVIVGETGSGKTTQIPQYLHESGYTKRGKVGCTQPRRVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSEKTVLKYMTDGMLLREFLGEPDLASYSVVMVDEAHERTLSTDILFGLDIARFRPDLKLLISSATLDAEKFSDYFDSAPIFKIPGRRYPVEIHYTKAPEADYLDAAIVTALQIHVTQPPGDILVFLTGQEEIETAEEIMKHRTRGLGTKIAELIICPIYANLPTELQANIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFCKMKSYNPRTGMESLLVNPISKASAMQRAGRSGRTGPGKCFRLYTAYNYYNDLEDNTVPEIQRTNLANVVLSLKSLGIHDLLNFDFMDPPPAEALLKALELLYALSALNRLGELTKVGRRMAEFPLDPMLSKMIVAADNYKCSDEIISIAAMLSVGNSIFYRPKDKQVHADNARMNFHTGNVGDHIALLKVYSSWKETNYSTQWCYENYIQVRSMKRARDVRDQLEGLLERVEIELASNPNDLDAIKKSITAGFFPHSARLQKNGSYRTVKHPQTVHIHPSSGLAQVLPRWVIYHELVLTTKEYMRQVTELKPEWLVEIAPHFYQLKDVEDPGSKKMPRTEGRAVKD* 759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0692 758 Gene3D - 83 292 IPR027417 -
Vvi17g0692 758 FunFam Pre-mRNA-splicing factor ATP-dependent RNA helicase 293 468 - -
Vvi17g0692 758 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 234 243 IPR002464 -
Vvi17g0692 758 Gene3D - 293 468 IPR027417 -
Vvi17g0692 758 Coils Coil 626 646 - -
Vvi17g0692 758 Gene3D - 492 650 - -
Vvi17g0692 758 CDD SF2_C_RHA 294 455 - -
Vvi17g0692 758 SMART helicmild6 342 447 IPR001650 -
Vvi17g0692 758 FunFam Pre-mRNA-splicing factor ATP-dependent RNA helicase 492 593 - -
Vvi17g0692 758 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 129 290 IPR014001 -
Vvi17g0692 758 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 313 488 IPR001650 -
Vvi17g0692 758 FunFam Pre-mRNA-splicing factor ATP-dependent RNA helicase 76 292 - -
Vvi17g0692 758 Pfam Helicase conserved C-terminal domain 319 447 IPR001650 -
Vvi17g0692 758 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 118 641 IPR027417 -
Vvi17g0692 758 PANTHER ATP-DEPENDENT RNA HELICASE 75 734 - -
Vvi17g0692 758 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 657 733 IPR011709 -
Vvi17g0692 758 SMART ha2_5 508 600 IPR007502 GO:0004386
Vvi17g0692 758 Pfam Helicase associated domain (HA2) 509 583 IPR007502 GO:0004386
Vvi17g0692 758 SMART ultradead3 117 299 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0692 Vvi-Chr17 7650300 7658335 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0692 K12813 - vvi:100244993 1474.14