Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0691 ATGGGTTGCTGTCTCAGCAAGAACGGCGATTCCAAAGCCAGTAGGATCGGACGGTGGAAATCCACAGGCATTGTTGCTCTGCGCGACTCTAAATTGAAGGCATTTCCAGATGAAGTTCTTGATCTGGATACATCTGTCCGCACTCTTGATTTAACACACAACAGGCTAGTTGACATTCCTATGGAGATCAGCAAATTGATTAACATGCAGCGCCTGATTCTAGCGGATAATCTAATTGAGCGACTCCCAATGAATCTGGGGAAACTTCAATCTCTGAAAGTTATGACACTTGATGGGAATCAAGTTACTACTCTGCCTGATGAATTGGGCATGCTGGTAAGGCTAGAGCGTCTATCCATCTCAGGGAATTTGTTAACATGCTTACCTGAGACTATAGGGAGCTTGCGCAATTTGTTGCTGTTAAATGTGTCAAATAACAAATTAAAGTGTCTTCCAGAATCAGTTGGTAGTTGCTTCTCTCTAGAAGAATTACAAGCGAATGATAATTCTATTGAAGATATCCCCGCATCATTTTGCAATCTCATTCATCTAAAATCACTCTGCTTAAATAATAATAACATTAACCAGATACCTCCAAATCTGTTGAAGGACTGTAAAGCGCTGCAGAATATTTCCCTGCACGACAATCCCATTTCAATGGATCAATTCCAACAGATGGAAGGATTCCAAGCATTTGAAACTCGGAGGAAAAAGAAGTTTGACAAGCAAATTGATTCAAATGTGATGATCAGTTCCAAAGGCCTTGATGAGGGTGTGGATCAATGA 786 0.4097 MGCCLSKNGDSKASRIGRWKSTGIVALRDSKLKAFPDEVLDLDTSVRTLDLTHNRLVDIPMEISKLINMQRLILADNLIERLPMNLGKLQSLKVMTLDGNQVTTLPDELGMLVRLERLSISGNLLTCLPETIGSLRNLLLLNVSNNKLKCLPESVGSCFSLEELQANDNSIEDIPASFCNLIHLKSLCLNNNNINQIPPNLLKDCKALQNISLHDNPISMDQFQQMEGFQAFETRRKKKFDKQIDSNVMISSKGLDEGVDQ* 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0691 261 SMART LRR_bac_2 160 177 - -
Vvi17g0691 261 SMART LRR_bac_2 89 108 - -
Vvi17g0691 261 SMART LRR_bac_2 181 200 - -
Vvi17g0691 261 SMART LRR_bac_2 112 131 - -
Vvi17g0691 261 SMART LRR_bac_2 135 154 - -
Vvi17g0691 261 ProSiteProfiles Leucine-rich repeat profile. 183 204 IPR001611 GO:0005515
Vvi17g0691 261 PANTHER - 26 220 - -
Vvi17g0691 261 SMART LRR_typ_2 89 111 IPR003591 -
Vvi17g0691 261 SMART LRR_typ_2 135 158 IPR003591 -
Vvi17g0691 261 SMART LRR_typ_2 112 134 IPR003591 -
Vvi17g0691 261 SMART LRR_typ_2 181 204 IPR003591 -
Vvi17g0691 261 SMART LRR_typ_2 66 88 IPR003591 -
Vvi17g0691 261 Pfam Leucine rich repeat 160 218 IPR001611 GO:0005515
Vvi17g0691 261 Pfam Leucine rich repeat 45 101 IPR001611 GO:0005515
Vvi17g0691 261 Gene3D Ribonuclease Inhibitor 2 240 IPR032675 -
Vvi17g0691 261 SUPERFAMILY L domain-like 17 221 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0691 25 257 Receptor kinase-like Gene Family AT5G46330 25.714 5.48e-13 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0691 - - vvi:100267304 496.508