Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0685 ATGGGATTCCGCTTCTTCTTATTTCTTTTTCTTGCTACCCTCCCTGCGTTCTTGGCTCAAGAATTTGAAGATGCAATAATTAAAGTTGATGGGGCTACAACAGTTGCTGAAACTGATGCTAACTTCATCTGTGCTACTCTGGATTGGTGGCCTCATGATAAGTGTAACTACAACCACTGTCCATGGGGATATTCATCTGTAATAAATATGGACTTGTCTCATCCTCTTTTTGCCAAGGCAATTGAAGCTTTTAAGCATTTGAGAATAAGAATTGGAGGTTCTTTGCAAGACCAAGTATTATATGATATCGGATCTTTGAGGTCCCCTTGCCATCCTTTTAGAAAGATGAATGATGGATTATTTGGATTTTCGAAGGGATGTTTACGCATGAGTAGGTGGGATGAGCTAAACCGCTTGTTCAGTCAGACAGGAGTAATTCTGACATTTGGGTTGAATGCACTCTATGGGAGGTACCAGATTAGAAAAGGCGCATGGGCCGGAGTTTGGGACTCAAGTAACACTCAGAACTTCATAAAGTACACTATTTCCAAGGGATACCAGATTGATTCATGGGAATTTGGTAACGAGTTGAGTGGAAGTGGAGTTGGTGCAAGCGTTAATGCTGAACAGTATGGGAAGGACTTAATCAACCTTAAAGCTATCATCAATAAGCTGTATAATAACTCGAATGTCAAACCATTACTTGTAGCACCAGGAGGATTCTATGAACAGGATTGGTATGCTAAGCTTCTTCAGGTTTCGGGTTCAAGCACAGTCAATGTTGTGACACATCATATCTATAATCTGGGTGCAGGTGTAGATCCCAATCTTGTGAGTAAGATACTGAATCCCCATTACTTGAGCAGGGTAGAAGAAACATTCAAGAGCCTTGACAAAACCCTTCAAACCTGGGGCCCTTGGGCTTCTGCTTGGGTTGGAGAATCTGGTGGGGCTTATAACAGTGGTGGTCATCTGGTGTCTAACACCTTTGTAAACAGCTTTTGGTACTTAGATCAGCTTGGAATGGCATCCAAGTACCACACTAAAGTTTATTGCAGGCAGACTTTGATTGGTGGAAACTATGGTCTCCTCAACACAACCACTTTAGTTCCCAACCCTGATTATTACAGCGCCCTTCTGTGGCATCGACTCATGGGAAAAGGTGTACTTGCTGTTGATAGTACTGCCTCACCATTTTTACGCTCTTATGCCCATTGTTCAAAAGGGAAGGCAGGCATAACTTTACTCCTGATCAATTTAAGCAACCAGACCACATTCCAAATCAATGTTGAGAACAGCATGAACCTCAACTTGTTTGTGAAGAAGACAACCATGTACAGAGGAAGTGCTTTCATGCGTGGTCTCAAGAAATCAGCGTCATGGATCGGAAGTAAGGCAGATGAACAATTATTCAGAGAAGAGTATCATCTAACTCCAAAAGATGGGTACCTCAGAAGCCAGACCATGGTTCTAAATGGGATGCCCTTGGAGCTTACTGATGATGGAAACATCCCAAGTTTGAACCCAGTACGCCTTAATCTGAATGCACCGATATTCATCAATCCATTGTCCATTGCATTCATTGCATTCCCCAACTTTGATGCCCCAGCTTGTGCGTGA 1620 0.4259 MGFRFFLFLFLATLPAFLAQEFEDAIIKVDGATTVAETDANFICATLDWWPHDKCNYNHCPWGYSSVINMDLSHPLFAKAIEAFKHLRIRIGGSLQDQVLYDIGSLRSPCHPFRKMNDGLFGFSKGCLRMSRWDELNRLFSQTGVILTFGLNALYGRYQIRKGAWAGVWDSSNTQNFIKYTISKGYQIDSWEFGNELSGSGVGASVNAEQYGKDLINLKAIINKLYNNSNVKPLLVAPGGFYEQDWYAKLLQVSGSSTVNVVTHHIYNLGAGVDPNLVSKILNPHYLSRVEETFKSLDKTLQTWGPWASAWVGESGGAYNSGGHLVSNTFVNSFWYLDQLGMASKYHTKVYCRQTLIGGNYGLLNTTTLVPNPDYYSALLWHRLMGKGVLAVDSTASPFLRSYAHCSKGKAGITLLLINLSNQTTFQINVENSMNLNLFVKKTTMYRGSAFMRGLKKSASWIGSKADEQLFREEYHLTPKDGYLRSQTMVLNGMPLELTDDGNIPSLNPVRLNLNAPIFINPLSIAFIAFPNFDAPACA* 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0685 539 SUPERFAMILY (Trans)glycosidases 39 385 IPR017853 -
Vvi17g0685 539 FunFam heparanase-like protein 3 62 383 - -
Vvi17g0685 539 PANTHER HEPARANASE-RELATED 19 538 - -
Vvi17g0685 539 Pfam Glycosyl hydrolase family 79, N-terminal domain 25 341 IPR005199 GO:0016020|GO:0016798
Vvi17g0685 539 Gene3D Glycosidases 62 383 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0685 Vvi-Chr17 7532204 7537040 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0685 1 539 Glycoside Hydrolase AT5G07830 65.201 0.0 741
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0685 K07964 - vvi:100257028 1097.42