Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vvi17g0683 | ATGTTTGGTTTGAAGAAATCCCCCTTGCATAAGTTTGCTAAGCATAACTCAGTTGACCCTGGATATCCTCATTCTTCTAGCACCAACCCTTTTGATTCTCATGATGACCTTGATGGCAAGAAAGCCCTTAAACCCTCAAGAAGGACTTCTTCTGAACCTATGCTAACTACACAACCTAACCCCAACCCGTTCGATGATGATGTGGGAAAAGGGTCTTCTTCTTCATCTTCAAATTTTCTTCTTTCATCAGAAAGAAACAAGTACAAGAATGATTTCCATGACTCAGGAGGAATAGAGAACCAATCTGTGCAAGAGTTGGAGAACTATGCAGTATACAAGGCCGAGGAGAATACAAAGATGGTCAACAACTGCCTGAAGATTGCAGAGGATATAAGAGAGGATGCCACTAAGACTTTGGTCACCTTGCATCAGCAGGGTCAACAAATTACCCGGACCCACATGAATGCTGCTGACATTGATCATGATCTCAGTCGGGGTGAGAAGCTTCTGGGAAGTCTTGGAGGAATCTTCTCGAAGACCTGGAAGCCAATAAAGACCCGCCCAATAACAGGGCCTATTACCACAAGAGATGATCTGTCTTACAGGAAGGGCAGCCACATGGAACAGAGAGAGAAGTTAGGATTGGCTCCTGCTCCCAAGGGACGGTTGGCTACAAGAACACCACCTCCTGAACCGACCAATGCACTGCAGAAAGTTGAGGTGGAACATGCAAAGCAAGATGACACACTTTCAGATTTAAGTAATCTATTGGACGAGCTGAAGTACATGGCTGTTGACATGGGAACTGAAATTGAAAGTCATAACCGAGCCTTGGCTCCTATGGAGGATGATGTGGATGTGTTAAGTATCAGAATTAAAGATGGGAATCAACGTGCTCGTCGTTTGCTTGGCAAGTAG | 918 | 0.4477 | MFGLKKSPLHKFAKHNSVDPGYPHSSSTNPFDSHDDLDGKKALKPSRRTSSEPMLTTQPNPNPFDDDVGKGSSSSSSNFLLSSERNKYKNDFHDSGGIENQSVQELENYAVYKAEENTKMVNNCLKIAEDIREDATKTLVTLHQQGQQITRTHMNAADIDHDLSRGEKLLGSLGGIFSKTWKPIKTRPITGPITTRDDLSYRKGSHMEQREKLGLAPAPKGRLATRTPPPEPTNALQKVEVEHAKQDDTLSDLSNLLDELKYMAVDMGTEIESHNRALAPMEDDVDVLSIRIKDGNQRARRLLGK* | 306 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vvi17g0683 | 305 | CDD | SNARE_Qc | 243 | 301 | - | - | |
| Vvi17g0683 | 305 | MobiDBLite | consensus disorder prediction | 1 | 79 | - | - | |
| Vvi17g0683 | 305 | SUPERFAMILY | SNARE fusion complex | 235 | 303 | - | - | |
| Vvi17g0683 | 305 | SUPERFAMILY | SNARE fusion complex | 101 | 171 | - | - | |
| Vvi17g0683 | 305 | Gene3D | - | 97 | 174 | - | - | |
| Vvi17g0683 | 305 | PANTHER | SYNAPTOSOMAL ASSOCIATED PROTEIN | 29 | 305 | - | - | |
| Vvi17g0683 | 305 | Gene3D | - | 237 | 304 | - | - | |
| Vvi17g0683 | 305 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 240 | 302 | IPR000727 | - | |
| Vvi17g0683 | 305 | CDD | SNARE_SNAP25N_23N_29N_SEC9N | 108 | 172 | IPR044766 | GO:0005484|GO:0031201 | |
| Vvi17g0683 | 305 | FunFam | SNAP25 homologous protein SNAP33 | 97 | 174 | - | - | |
| Vvi17g0683 | 305 | SMART | tSNARE_6 | 106 | 173 | IPR000727 | - | |
| Vvi17g0683 | 305 | SMART | tSNARE_6 | 235 | 302 | IPR000727 | - | |
| Vvi17g0683 | 305 | MobiDBLite | consensus disorder prediction | 31 | 47 | - | - | |
| Vvi17g0683 | 305 | MobiDBLite | consensus disorder prediction | 49 | 79 | - | - | |
| Vvi17g0683 | 305 | MobiDBLite | consensus disorder prediction | 188 | 232 | - | - | |
| Vvi17g0683 | 305 | MobiDBLite | consensus disorder prediction | 199 | 215 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vvi17g0683 | Vvi-Chr17 | 7520884 | 7524286 | Dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vvi17g0683 | K18211 | - | vvi:100246765 | 605.52 |