Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0654 ATGGATCAGCAGGTTGTCACGGTCGATCAGTTCACGGCCGCTATGGCTTCTATCCAGGAGGCTTTGGCTAGCCTCAGGCAGGAGATCAGTGGTCAGCAGGGTAGACCACCGACAGTTCAGGATGAGACGCCATATGACTCACACCCACCTCCACCACCCCCACCCGTTCCTTCAGTGCACCAGGCATCACCATATGTATTACACGGGCGTTCTGAGATCGCTCCACCCGCAGCCGCCCAGGCCGTTGTCGCTGATGACACGCATGCGCGCATGGACCGCATCGAGCAGTGTATGAGACAGATGAGAGTGTCAGATGGATCCGTCGTTTGGGATGATTTTGGGGGTATGCCGGTAGCCAGTTTACCGGCTAAGTTCAGGATGCCAGATATTGAGAAGTACACTGGTATTGGTTGTCCGCGCCTCCACCTCAGACTTTATAGCACCGTGATGAGGGCTCATGGACTAGACGAGCCTCAGATGATCACCCTTTTCCCCCTATCTCTGAGTGGGGCGGCTCAGCGCTGGTTTGCGTCTCTGGAGTCCTCGAGACGCCGTACATGGGATGACTTGGCCCAGGAGTTCCTACGACAGTTTTCGTTTAACACTGTTGTAGACGTATCGAGGAGAGAGCTCGAGGCTCTGAGGCAGAGGACAGAGGAGTCCGTTTCTTCTTTCATTTCCCGCTGGCGCGGGAAGATAGCTGAGATAGTGGATAGACCATCAGAGAGAGACCAGATTCAGATGGTTTTGAGGAGCCTACAGCCGAGGATCGCCAGACATGTGGTTGGGGCCCCGTTCACAGATTTTGGGTCTCTGGTTATGGCTTTGTATGATGTCGAGGACGGTATCACGAGAGGTTTATGGGCAGATTCTTCCCCTAGTGATGTTAAGGGGAAGAAACCATTCATAGGACCGAGACCGACAGAGGTTGGCGCTATCAGTTCATCCAGTCAGAGGCCTTTCAGACGCCATCAGCCGATCCCACAGTTTTCTGAGCCTCATTCTTCCTATGCATCTCATCAGTACAGGCCACGGACACCTCGTCCGGTTTATGATCAGACACACATGCCGCAGACATTGGTTGTACCTTCTTATGCCACTCAGGGCATTGAGAGACCCGCGGTCTCCTACACAGCCACAGGGCAGCCATGCTACGCTGCTCAGTTCACCGCGAGACCTGCGGCGCCTTATCCCCGACCTGGAGCCCAGCAAACTTCTGCTCCGTTTGCTTTGAGGACGCAGAGGCAGTTCTCGCAGATAGGCATGCCGTTGAGCCAGGCTCTTCGGAAGCTTACGGAGGCTGGTTTATTGACTGCTCTCACCCCTCGGCCACTACCTCAGCCGATTCCAGCTCAGTTCAGGATGGATTTACACTGTGCTTATCATCAGGGGCCTGGACATGAGACCGATCGATGCACCGCTCTGAGGCACGCTATTCAGGATCTGATAGACCAGGGTTTGGTACACTTGGGCCAGCCGAGTGTGACCACAAACCCGTTGCCGACCCACACCACACATGCAGTTCCTCCACCAGCTGGTGGTATTCATTTCTTGGACTTTGATGAGACTGATGATCATGTCCATATGTTGAGTTGGGATGATCCAGACCCAGAGCCTATCATGCCAGCTGGGATTTATGAGACGAGTGGGGTGACTCTAGAGCCACAGATGCCTGCTCCATTCCGATTATTTCATGAGGCAGCGTCTGTACAGACTACCACTTCCGAGCCTTTGACATTCACACGCTATAGCGTTCAGGCGCCGTACATTCTGATCCCAGATGTTGAGGAGGTTCGAGCTCCACATGTTGATATTTCTCAGACTCCGGACATCCAGTATATCCTCCGAGGGGGTAGAGTGATGCGACAGCCACCTCTCGCGGCAGCTAGGCCAGTTGAGGGTACATCTGCTTCCCAGGAGGAGGTCAGAGCAGAGGATGACGAGATTTTGAGGCAGTTGCAGAGCACTCAGGCTCGTATTTCTATCTGGAGCCTTTTAGCGTCCTCCAGTACTCATCGGGATGCACTGACTCGAGCTCTGAGCCAGATCAGAGTTGATACCACGACCACTCCTGAGGGACTCATTCATATGATGACGGCTGGCAGAGCCACTTGTATCGTCTTTTCAGATGACGACTTGCCACCAGAGGGTTCTGGCCACACGCGTCCTCTCTATATATCTGTTGGTTGTTCAGGTCGTCGAGTTCCATCTGTCCTTTTGGACAATGGCTCGGCCCTGAACGTATGTCCTCTTGCCACTGCCATCGCCCTTGGATACGCTCCTTCTGATTTCGGTCCCTCTACTCAGACCGTTCGCGTATATGACAGTACTCGGAGGGAGGTCATGGGTACATTGGAGATCGAGCTACTGATCGGTCCGGCCACTTTTGTCGCTATATTCCAGGTTTTAAGGATTCCTACATCCTTTAACCTGCTTTTGGGCCGACCATGGATCCACCGAGCCGGGGCCATTCCTTCTTCCCTTCATCAGAAGGTGAAGTTTATTCACGATGGTCAGGTCGTCGTGGTGCAGTCTGTGGGAGACATGTTCATTGCTGCCGAGCCTGTGCTCGAGATTAGTCACACTGATGAGGATCTTTTTCTGACTGGATTCACCTTCGATGAGGTGCAGACCGTAGAGATAGAGGATTTCTGCCGAGATTTTGTGGCCATGTCATTTGACCAGCATGGGAGCACAGTGGTGCTCGATATTATGCGGAGCATGTCCTATCTACCCGGCATGGGGTTGGGCCGACGTCAGCATGGACCGAGCGAGTTCATAGCCATCCCTGATCATGACGTACCGTTCGGACTCGGGTTCACCCCCACTGAGGCCGATTATCTCTATATGGCGCGTTTGCGTAAGGAGAGAGTGAGGGCTCGGCTGACTCATACACCTTTCGACTATCCTCTTCGCCCATACACCATGAGCTTATCTGATTACTTTGTGAGGGCATCAGAGCCATTGACCCGCGCAGACGTGATCATTGGCGGACTTAGTACCACCCAGGAGGTTGAGCTTCAGCGCCTTGTCCAGCAGTTACGATTGGGAGACGGAGCCCCTGGTCCTTCGACTTCTGTGTTGATTGCTCCTTCTTCTCCAGATCGCACTAGCCTTATGACGCTTTGCTTCCCGGACGAGACCGATGAGCATGGGACCTTTGATGAGGTCGGGGACGTAGTGGACGGAGCCGCCCCACACGACGAGTACATCGACGAGATGCTCGCCCTGAGCATGAGCCAGATTGAGGAGACTGTTCATCCTGGGCTTGCTTCATCATTCGATCTTTTCGGGGTATCCGCCATCGAGCTTGCCGAGGAGAGCGTGACTGCCCCTGCTCTGGAGTCTGTTGAGGACCCTATAGTTTTTTATGATTTGATTGATAGCCATGTTGGCATTGTTGAGGGAGCGTCCGACTCTGTGGACCCACCTCTTTCATTTGACGTTCTGTCGGGGTTCGTCTCCCGTTCTGACATCGTTTCCGATGTTCCATCTATGGATTTGAGCATTTTTTAG 3516 0.5358 MDQQVVTVDQFTAAMASIQEALASLRQEISGQQGRPPTVQDETPYDSHPPPPPPPVPSVHQASPYVLHGRSEIAPPAAAQAVVADDTHARMDRIEQCMRQMRVSDGSVVWDDFGGMPVASLPAKFRMPDIEKYTGIGCPRLHLRLYSTVMRAHGLDEPQMITLFPLSLSGAAQRWFASLESSRRRTWDDLAQEFLRQFSFNTVVDVSRRELEALRQRTEESVSSFISRWRGKIAEIVDRPSERDQIQMVLRSLQPRIARHVVGAPFTDFGSLVMALYDVEDGITRGLWADSSPSDVKGKKPFIGPRPTEVGAISSSSQRPFRRHQPIPQFSEPHSSYASHQYRPRTPRPVYDQTHMPQTLVVPSYATQGIERPAVSYTATGQPCYAAQFTARPAAPYPRPGAQQTSAPFALRTQRQFSQIGMPLSQALRKLTEAGLLTALTPRPLPQPIPAQFRMDLHCAYHQGPGHETDRCTALRHAIQDLIDQGLVHLGQPSVTTNPLPTHTTHAVPPPAGGIHFLDFDETDDHVHMLSWDDPDPEPIMPAGIYETSGVTLEPQMPAPFRLFHEAASVQTTTSEPLTFTRYSVQAPYILIPDVEEVRAPHVDISQTPDIQYILRGGRVMRQPPLAAARPVEGTSASQEEVRAEDDEILRQLQSTQARISIWSLLASSSTHRDALTRALSQIRVDTTTTPEGLIHMMTAGRATCIVFSDDDLPPEGSGHTRPLYISVGCSGRRVPSVLLDNGSALNVCPLATAIALGYAPSDFGPSTQTVRVYDSTRREVMGTLEIELLIGPATFVAIFQVLRIPTSFNLLLGRPWIHRAGAIPSSLHQKVKFIHDGQVVVVQSVGDMFIAAEPVLEISHTDEDLFLTGFTFDEVQTVEIEDFCRDFVAMSFDQHGSTVVLDIMRSMSYLPGMGLGRRQHGPSEFIAIPDHDVPFGLGFTPTEADYLYMARLRKERVRARLTHTPFDYPLRPYTMSLSDYFVRASEPLTRADVIIGGLSTTQEVELQRLVQQLRLGDGAPGPSTSVLIAPSSPDRTSLMTLCFPDETDEHGTFDEVGDVVDGAAPHDEYIDEMLALSMSQIEETVHPGLASSFDLFGVSAIELAEESVTAPALESVEDPIVFYDLIDSHVGIVEGASDSVDPPLSFDVLSGFVSRSDIVSDVPSMDLSIF* 1172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0654 1171 Coils Coil 8 35 - -
Vvi17g0654 1171 MobiDBLite consensus disorder prediction 25 40 - -
Vvi17g0654 1171 Pfam Retrotransposon gag protein 163 254 IPR005162 -
Vvi17g0654 1171 MobiDBLite consensus disorder prediction 294 347 - -
Vvi17g0654 1171 MobiDBLite consensus disorder prediction 25 62 - -
Vvi17g0654 1171 Gene3D Acid Proteases 712 842 IPR021109 -
Vvi17g0654 1171 CDD retropepsin_like 726 819 - -
Vvi17g0654 1171 PANTHER DNA-DIRECTED RNA POLYMERASE SUBUNIT ALPHA 149 508 - -
Vvi17g0654 1171 MobiDBLite consensus disorder prediction 43 60 - -
Vvi17g0654 1171 MobiDBLite consensus disorder prediction 310 342 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0654 Vvi-Chr17 7199987 7203502 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0654 - - vvi:104882404 2273.05