Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0647 ATGAGCCAGGTATTCGAAGGATACGAGCGTCAGTATTGCGAGCTTTCCGCGAATTTATCGCGGAAATGTACTGCTGCCAGTCTTCTTAATGGGGAGCAGAAGAAGCAGAAGGTTTCTGAAATAAAAGCTGGATTGGATGATGCTGATGCTTTGATCCGGAAAATGGATCTTGAGGCAAGGAGTTTGCAGCCAAGTGTAAAGGCTATGCTTCTTGCTAAGTTAAGAGAATATAAAACTGATCTAAACAATGTGAAAAATGAGGTTAAAAGAATCACATCAGCTAATACCAATCAGGCTGCCCGAGATAATTTGCTGGAGTCAGGAATGGCAGATACAATGACAGTTTCTGCTGATCAGAAAACAAGGTTATTGATGTCGACAGGTAGATTGAATCAGTCCGGTGACCGAATTAAGGAGAGTAGAAGAACAATGCTTGAAACAGAAGAACTTGGTGTTTCAATCCTTCAAGATTTGCACCAACAACGCCAGTCTCTCCTACATGCCCATAACACAGAAGTTTGA 522 0.4195 MSQVFEGYERQYCELSANLSRKCTAASLLNGEQKKQKVSEIKAGLDDADALIRKMDLEARSLQPSVKAMLLAKLREYKTDLNNVKNEVKRITSANTNQAARDNLLESGMADTMTVSADQKTRLLMSTGRLNQSGDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTEV* 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0647 173 FunFam Vesicle transport through interaction with t-SNAREsB 117 172 - -
Vvi17g0647 173 Pfam Snare region anchored in the vesicle membrane C-terminus 129 170 - -
Vvi17g0647 173 CDD SNARE_Vti1 127 171 - -
Vvi17g0647 173 Pfam Vesicle transport v-SNARE protein N-terminus 12 90 IPR007705 GO:0006886|GO:0016020
Vvi17g0647 173 Gene3D - 117 172 - -
Vvi17g0647 173 SUPERFAMILY t-snare proteins 6 93 IPR010989 GO:0016020|GO:0016192
Vvi17g0647 173 Coils Coil 67 94 - -
Vvi17g0647 173 PANTHER VESICLE TRANSPORT V-SNARE PROTEIN VTI1-RELATED 3 171 - -
Vvi17g0647 173 Gene3D - 1 100 IPR038407 -
Vvi17g0647 173 SUPERFAMILY SNARE fusion complex 130 171 - -
Vvi17g0647 173 FunFam Vesicle transport through interaction with t-SNAREs homolog 1A 1 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0647 Vvi-Chr17 7110434 7122493 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0647 K08493 - vvi:100248505 329.331