Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0640 ATGGGCCCAGGTGAAGAGCGCTCTGAAATTGCATTTTTCGATGTGGAAACCACGGTGCCCACACGAGTCGGGCAGGGTTTTGCCATATTGGAATTCGGAGCCATTCTGGTATGCCCTAGAAAGCTGGTCGAGCTGGAGAGCTACTCCACCTTGGTCCGACCCCACGACCTCTCTCTCGTCTCCTCCTTGTCCGTCCGTTGTAACGGCATTACACGAGACGCCGTCGTTTCCGCTCCTAATTTCCGCGACATTGCCGATAGGGTTTATGACATTCTTCATGGACGGATTTGGGCGGGTCACAATATATTGAGGTTTGACTGTGCTCGAATTAGGGAGGCTTTTGCAGAGATTGGTCGGCCAGCACCAGAGCCCAAGGGTTCAATAGATTCCTTGGCGCTGTTGACTCAGAGATTTGGCCGGAGAGCTGGGGATATGAAGATGGCCACACTTGCAACCTATTTTGGGCTTGGACAGCAGACACACAGGAGTTTAGATGATGTCAGGATGAATCTGGAGGTTCTCAAATATTGTGCAACAGTTTTGTTCCTGGAGTCGAGCCTCCCAGACATATTTACCACAAACAGTTGGGTTTCTCCAAATGCTGTTACAAGGAGTCGTAGTAATGGAAAAGCTTCTCCAGTGGGAATGAATCTAAACATGAGTACTCCCTCATCAAGTATCAAATTTGAAAATCATTCAATATCATCTCCTAGTACTCACAGCAGTATGGAAGGAATATTAAATTTAGTTGAACCTAACACAAACCAACCGGACCCTTTCAACTTGGGTGCACTCAGCAGTGAAATTGAAAGAGAGTCCCTTAAGCCGGATTATGCCTTGGAAGAAAAACCTGTGACCGAGTCTCTTGAGATGCTTTCTACAACAACTGCATCTCAGGATTGCTGTGACTATGCTGGCTTCCTAGATCCTGCAGAGGTTTCTGTTGCTTCTATCAGTGCGTCTTTTGTTCCATTGTATCGTGGGACTCGGAGAATGCAAATATTGCACAATGATGTCAAGTTGCTGCTTCATTGTACTCAACTGCGAGTGAGGTTTGGGATAAGTACAAGATTTGTTGATCCTGCTGGACGGCCACGGTTGAGTTTTGTGGTGGATGGATCTCCAAGCCTATGTCAGGTTCTGGATGCATGTGACCAACTTGCTTACAAGTTGTCTGTGGATTCTGGTAGCAGCTCGGAATGGAGGCCAGTTGTGATCAGAAAGACTGGGTTTTTAAACACTCCTACCATCAGATTAAGCATACCTACTGTGACAAATGGGGATATTGCCATATATGCCACAGAGATATACCAAAAAGATCCTTCGGGTACCACACAGAGGCTTATATTTAGTAGATTTGATGCTGCAGAGCTTGATACCTTGTTCGTTCCAGGAACCCTTGTGGATACATACTTTGCCCTGGACCCATATGACTATCAACAGAATGCAGGCATCAAACTAGTTGCCAAAAAGTTGATCATCCATGGCAAATGA 1494 0.4625 MGPGEERSEIAFFDVETTVPTRVGQGFAILEFGAILVCPRKLVELESYSTLVRPHDLSLVSSLSVRCNGITRDAVVSAPNFRDIADRVYDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGSIDSLALLTQRFGRRAGDMKMATLATYFGLGQQTHRSLDDVRMNLEVLKYCATVLFLESSLPDIFTTNSWVSPNAVTRSRSNGKASPVGMNLNMSTPSSSIKFENHSISSPSTHSSMEGILNLVEPNTNQPDPFNLGALSSEIERESLKPDYALEEKPVTESLEMLSTTTASQDCCDYAGFLDPAEVSVASISASFVPLYRGTRRMQILHNDVKLLLHCTQLRVRFGISTRFVDPAGRPRLSFVVDGSPSLCQVLDACDQLAYKLSVDSGSSSEWRPVVIRKTGFLNTPTIRLSIPTVTNGDIAIYATEIYQKDPSGTTQRLIFSRFDAAELDTLFVPGTLVDTYFALDPYDYQQNAGIKLVAKKLIIHGK* 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0640 497 CDD DEDDh 11 175 - -
Vvi17g0640 497 Gene3D - 4 180 IPR036397 GO:0003676
Vvi17g0640 497 SUPERFAMILY Ribonuclease H-like 10 179 IPR012337 -
Vvi17g0640 497 PANTHER DNA POLYMERASE III SUBUNIT EPSILON 6 486 - -
Vvi17g0640 497 Pfam Exonuclease 12 174 IPR013520 -
Vvi17g0640 497 SMART exoiiiendus 9 183 IPR013520 -
Vvi17g0640 497 FunFam Exonuclease family protein 3 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0640 Vvi-Chr17 7060940 7066724 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0640 - - vvi:100265514 977.237