Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0639 ATGATCCGAGGGCATTCTCAGAGCGAAACGCCCCATAAGTTGGTTGAGCTTTACAATCGAATGGTAGAGGCTGAGGCTGAGCCCAATGAGTTCACGTATTCGTTTCTTATTGGTGGTTGTGCGCGGTCGAGGTTGTTGAGAGAGGGCGAGCAGGTGCATGGAAGAGTTGTGGCAAACGGGTATTGCACTAATGTGTTTGTTCGGACGAGTTTGGTTAATTTGTATGCGATCGCTGGGGGATATGATGGGGTAAGGAAGGCACGCCGGGTGTTTGATGAAATAGTTGATAGAAATATAGTGAGTTGGAATTCGTTGCTTGCAGGGTATGTTAGGTGTGGGGATGTTGATGGGGCACGGAGGATTTTTGATGAGATGCCGGAAAGGAATGTTGTCTCGTGGACAACCATGATTGCAGGATGTGCGCAAATTGGGAGGTGTAAGCAAGCGTTACATTTGTTTCATGAGATGAGAAGGGCCGGTGTAAAATTAGACCAGGTGGCATTGGTGGCAGCTTTGTCAGCCTGTGCTGAATTGGGGGACTTGAAGTTGGGGACATGGATCCACTCTTACATTGATGAGAGACTGCATGCTGGAAATCAGCCATTGCTTGTGTCTTTGAACAATTCGCTCATACACATGTATGCCAGCTGTGGTGTAATTGATAAAGCTTATAAAGTATTCATAGGGATGCAACAGAGAAGCACTATTTCTTGGACAAGCATGATCACAGGTTTTGCAAAACAAGGCCATGCAGAAGAAGCTCTTGGTGTGTTTCAGTGGATGCAGAGGTTGGGAACGGATGAAGGGAGACCCGATGGGATAACCTTCATTGGAGTTCTGTGTGCCTGCAGCCATGCTGGATTTGTCGACCAAGGCCGTCATTTTTTTGAATGCATGAATAAAAAATGGGGCATTGTACCAAGGATTGAGCACTATGGATGCATGGTTGATCTCCTGAGCCGTGCTGGCTTCTTGGATGAAGCACATAGACTCATTGAGTCTATGCCTATGAAGCCAAATGATGCTGTATGGGGTGCTCTTCTTGGTGGATGCAGGATTCACAAGAATGCCGAGCTTGCTTCCCATGTTGCTCAAAAATTGGCACTTGAGCTTAAACCTGATCAAGCTGCAGGCTATCTTGTGCTACTGTCAAATGTTTATGCTACTGCTAAAAGGTGGCAGGACGTTGCTTTAGTGAGACAGAAGATGGTTGAGATAGGTGTAAGAAAGCCTGCAGGCCGAAGTTGGGTCCAAATAAATGGAGTTGTCCATGACTTTGTGGCAGGTGACTGGACTCACAAGCATGCATCTTCAGTATATGAGATGCTTAGCAAGATTACAAGGCAAGCCAAATTGGAAGGCTACAAACTGGACATTTCAGAGGTGCTTTTGGACGTTGAATAG 1404 0.4637 MIRGHSQSETPHKLVELYNRMVEAEAEPNEFTYSFLIGGCARSRLLREGEQVHGRVVANGYCTNVFVRTSLVNLYAIAGGYDGVRKARRVFDEIVDRNIVSWNSLLAGYVRCGDVDGARRIFDEMPERNVVSWTTMIAGCAQIGRCKQALHLFHEMRRAGVKLDQVALVAALSACAELGDLKLGTWIHSYIDERLHAGNQPLLVSLNNSLIHMYASCGVIDKAYKVFIGMQQRSTISWTSMITGFAKQGHAEEALGVFQWMQRLGTDEGRPDGITFIGVLCACSHAGFVDQGRHFFECMNKKWGIVPRIEHYGCMVDLLSRAGFLDEAHRLIESMPMKPNDAVWGALLGGCRIHKNAELASHVAQKLALELKPDQAAGYLVLLSNVYATAKRWQDVALVRQKMVEIGVRKPAGRSWVQINGVVHDFVAGDWTHKHASSVYEMLSKITRQAKLEGYKLDISEVLLDVE* 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0639 467 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 234 268 IPR002885 -
Vvi17g0639 467 Pfam PPR repeat 311 336 IPR002885 -
Vvi17g0639 467 Pfam PPR repeat 208 233 IPR002885 -
Vvi17g0639 467 FunFam Pentatricopeptide repeat-containing protein, chloroplastic 196 288 - -
Vvi17g0639 467 Gene3D Tetratricopeptide repeat domain 193 267 IPR011990 GO:0005515
Vvi17g0639 467 Gene3D Tetratricopeptide repeat domain 268 444 IPR011990 GO:0005515
Vvi17g0639 467 Gene3D Tetratricopeptide repeat domain 1 81 IPR011990 GO:0005515
Vvi17g0639 467 FunFam Pentatricopeptide (PPR) repeat-containing protein 300 465 - -
Vvi17g0639 467 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1 462 IPR046960 GO:0003723|GO:0009451
Vvi17g0639 467 Gene3D Tetratricopeptide repeat domain 82 192 IPR011990 GO:0005515
Vvi17g0639 467 Pfam E motif 354 418 IPR046848 -
Vvi17g0639 467 NCBIfam pentatricopeptide repeat 131 164 IPR002885 -
Vvi17g0639 467 NCBIfam pentatricopeptide repeat 236 265 IPR002885 -
Vvi17g0639 467 NCBIfam pentatricopeptide repeat 100 131 IPR002885 -
Vvi17g0639 467 Pfam PPR repeat 97 125 IPR002885 -
Vvi17g0639 467 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 98 132 IPR002885 -
Vvi17g0639 467 Pfam PPR repeat family 234 283 IPR002885 -
Vvi17g0639 467 Pfam PPR repeat family 128 174 IPR002885 -
Vvi17g0639 467 Pfam PPR repeat family 1 42 IPR002885 -
Vvi17g0639 467 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 29 63 IPR002885 -
Vvi17g0639 467 FunFam Pentatricopeptide repeat-containing protein chloroplastic 51 195 - -
Vvi17g0639 467 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 133 163 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0639 Vvi-Chr17 7058124 7059527 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0639 15 463 Glycoside Hydrolase AT3G49170 34.222 9.32e-84 273
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0639 - - vvi:100260292 951.814