Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0637 ATGAAGAAAAAGGGATTCCTTCCGAATGCTGTGACCTACAATACACTCATTGATGGGTACTGCAAAGAAGGCAACATGGAGAAGGCAATAGAGGTGTGTTCTCAAATGACAGAAAAGGGTATAGAGCCTAACATCATTACCTTCTCTACATTGATTGATGGTTATTGCAAGGCAGGGAAAATGGAGGCTGCCATGGGATTGTACACTGAAATGGTAATCAAAGGTCTTCTACCTGATGTAGTTGCTTATACAGCTTTAATTGATGGGCATTTCAAAGATGGCAACACAAAAGAAGCTTTCCGGCTTCATAAGGAGATGCAGGAGGCAGGCCTTCATCCTAATGTTTTCACACTTAGTTGCTTAATTGATGGATTATGCAAGGATGGAAGGATTAGTGATGCAATCAAACTTTTCTTAGCGAAAACTGGAACTGATACCACTGGTAGTAAAACTAATGAGTTGGATAGAAGCTTGTGTTCCCCAAACCATGTGATGTATACAGCCCTGATTCAGGGTTTGTGCACGGATGGGAGGATTTTTAAAGCAAGTAAGTTTTTCTCAGATATGAGATGCTCTGGTTTAAGACCAGATGTGTTCACTTGCATTGTCATTATTCAGGGGCATTTCCGAGCCATGCATTTGCGTGATGTGATGATGTTGCAGGCTGATATCCTAAAGATGGGTATCATACCAAACAGTAGTGTATACCGGGTCTTGGCTAAGGGTTATGAAGAGAGTGGATACCTCAAATCAGCTCTCAGGTGTTCTGAGGATTTATCAGGGATAGGCATTGGGTGTTCAAATTTGAATGACCTGTAA 819 0.4151 MKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQEAGLHPNVFTLSCLIDGLCKDGRISDAIKLFLAKTGTDTTGSKTNELDRSLCSPNHVMYTALIQGLCTDGRIFKASKFFSDMRCSGLRPDVFTCIVIIQGHFRAMHLRDVMMLQADILKMGIIPNSSVYRVLAKGYEESGYLKSALRCSEDLSGIGIGCSNLNDL* 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0637 272 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3, MITOCHONDRIAL 1 266 - -
Vvi17g0637 272 NCBIfam pentatricopeptide repeat 117 138 IPR002885 -
Vvi17g0637 272 NCBIfam pentatricopeptide repeat 164 198 IPR002885 -
Vvi17g0637 272 NCBIfam pentatricopeptide repeat 11 45 IPR002885 -
Vvi17g0637 272 NCBIfam pentatricopeptide repeat 81 115 IPR002885 -
Vvi17g0637 272 NCBIfam pentatricopeptide repeat 46 80 IPR002885 -
Vvi17g0637 272 Pfam PPR repeat family 78 127 IPR002885 -
Vvi17g0637 272 Pfam PPR repeat family 161 208 IPR002885 -
Vvi17g0637 272 Pfam PPR repeat family 8 57 IPR002885 -
Vvi17g0637 272 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 162 196 IPR002885 -
Vvi17g0637 272 SUPERFAMILY HCP-like 9 112 - -
Vvi17g0637 272 Gene3D Tetratricopeptide repeat domain 77 142 IPR011990 GO:0005515
Vvi17g0637 272 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 79 113 IPR002885 -
Vvi17g0637 272 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 44 78 IPR002885 -
Vvi17g0637 272 FunFam Pentatricopeptide repeat-containing protein At5g39710 1 97 - -
Vvi17g0637 272 Gene3D Tetratricopeptide repeat domain 1 76 IPR011990 GO:0005515
Vvi17g0637 272 Gene3D Tetratricopeptide repeat domain 149 259 IPR011990 GO:0005515
Vvi17g0637 272 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 9 43 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0637 29 267 Glycosyltransferase AT1G05670 29.707 1.35e-29 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0637 - - vvi:100853899 552.747