Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0636 ATGTATTCAGCAACGGGAAATGTTGCTGATGCACATAATATGTTTGACGAAATACCTTCCAAAAATCTCATCTCTTGGACTTCCGTGATTTCTGCTTATGTTGACAATCAGAGGCCCAATAAAGCTCTTCAGCTCTTCAGGCAGATGCAGATGGATGATGTGCAACCTGATATAGTCACAGTAACTGTAGCTCTCTCCGCCTGTGCTGACCTTGGGGCGTTAGACATGGGAGAATGGATTCATGCTTACATCCGCCATAGAGGACTCGATACAGATTTATGCCTAAACAATTCTCTCATAAACATGTATTCAAAATGTGGGGAGATCGGTACTGCCAGGAGATTGTTTGATGGTACGCAGAAGAAGGATGTCACAACCTGGACATCCATGATTGTGGGGCATGCCCTGCATGGACAAGCAGAGGAGGCGCTTCAACTTTTTACAGAAATGAAAGAAACGAACAAAAGGGCAAGGAAGAACAAAAGGAATGGTGAACACGAGAGCTCTTTAGTCCTCCCTAATGATGTTACTTTCATGGGAGTTTTAATGGCCTGCAGCCATGCAGGTCTTGTGGAAGAAGGGAAGCAGCATTTCAGAAGCATGAAAGAGGATTATAGCTTGAGGCCAAGAATTTCCCACTTTGGCTGCATGGTGGATCTTTTATGCCGTGCTGGTCTCCTAACAGAAGCTTATGAGTTTATATTGAAGATGCCGGTGCGGCCAAACGCAGTGGTGTGGCGTACATTGCTAGGTGCATGCAGCCTCCAAGGTGACAGCAACGGCAACGGCAACAGCAACATTAAGATTTACTCAGAAGCCCGTCGGCAGCTGCTCGAGCTGGAGCCTAGCCATGTTGGTGACAATGTCATCATGTCAAATTTATATGCTGCCAAAGGCATGTGGGATAAGAAGATGTTAGTCAGAAACCAAATAAAGCAGAGGAGAGATCCAGGTTGCAGTTCAATTGAAGTGGGAATTGACATTAAAGAGTTTGTTGCTGCAGATGATCAACATCCATGTATGCCTCAGATATATGAGATTCTTGACCACCTGACTAGAACCATGAGAGCTTCTGACTGTGCTCTGGGGACAGACACCCCCATGGAGTGA 1110 0.4568 MYSATGNVADAHNMFDEIPSKNLISWTSVISAYVDNQRPNKALQLFRQMQMDDVQPDIVTVTVALSACADLGALDMGEWIHAYIRHRGLDTDLCLNNSLINMYSKCGEIGTARRLFDGTQKKDVTTWTSMIVGHALHGQAEEALQLFTEMKETNKRARKNKRNGEHESSLVLPNDVTFMGVLMACSHAGLVEEGKQHFRSMKEDYSLRPRISHFGCMVDLLCRAGLLTEAYEFILKMPVRPNAVVWRTLLGACSLQGDSNGNGNSNIKIYSEARRQLLELEPSHVGDNVIMSNLYAAKGMWDKKMLVRNQIKQRRDPGCSSIEVGIDIKEFVAADDQHPCMPQIYEILDHLTRTMRASDCALGTDTPME* 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0636 369 Gene3D Tetratricopeptide repeat domain 1 163 IPR011990 GO:0005515
Vvi17g0636 369 Gene3D Tetratricopeptide repeat domain 164 325 IPR011990 GO:0005515
Vvi17g0636 369 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1 357 IPR046960 GO:0003723|GO:0009451
Vvi17g0636 369 FunFam Pentatricopeptide repeat-containing protein At2g36730 164 330 - -
Vvi17g0636 369 Pfam E motif 265 323 IPR046848 -
Vvi17g0636 369 NCBIfam pentatricopeptide repeat 24 58 IPR002885 -
Vvi17g0636 369 NCBIfam pentatricopeptide repeat 126 153 IPR002885 -
Vvi17g0636 369 Coils Coil 140 160 - -
Vvi17g0636 369 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 22 56 IPR002885 -
Vvi17g0636 369 Pfam PPR repeat 97 118 IPR002885 -
Vvi17g0636 369 Pfam PPR repeat 176 204 IPR002885 -
Vvi17g0636 369 Pfam PPR repeat 213 238 IPR002885 -
Vvi17g0636 369 Pfam PPR repeat 126 152 IPR002885 -
Vvi17g0636 369 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 123 157 IPR002885 -
Vvi17g0636 369 FunFam Pentatricopeptide (PPR) repeat-containing protein-like 51 156 - -
Vvi17g0636 369 Pfam PPR repeat family 21 69 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0636 Vvi-Chr17 7050696 7051805 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0636 1 368 Glycoside Hydrolase AT3G49170 37.466 1.33e-81 264
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0636 - - vvi:100250059 752.666