Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0634 ATGGCGACTGCTTCATTGGGTTCGTCTACTCTTCAGTCCCAAATCAATGGATTTGGTGTTAATAAGCTTCAAAGATCTTCTCTCTTTCAACCCACTTCCTTCACCTTTTCAAGGAGAAAATTTAGTAGTACAGTGAAGGCCTCGGCTCGGGTTGATAAGTTCTCAAAAAGTGACATCATTGTTTCTCCATCTATTCTGTCTGCTAATTTTGCAAAGTTGGGAGAACAGGTAAAAGCAGTGGAGTTGGCAGGTTGTGATTGGATTCATGTTGATGTAATGGATGGTCGCTTTGTTCCAAATATAACAATTGGACCTCTCATTGTCGGTGCCTTGCGCCCTGTGACAGATCTTCCATTGGATGTGCATTTGATGATAGTGGAACCTGAGCAGCGAGTTCCGGATTTTATCAAGGCTGGGGCTGACATAGTCAGTGTCCATTGTGAGCAATCTTCCACCATCCATTTGCATCGCACAATTAATCAAATTAAGAGCCTGGGAGCTAAAGCTGGAGTTGTTCTAAACCCTGCTACACCACTAAGTACAATAGAATATGTCCTTGATGTGGTTGATCTGGTATTGATTATGTCTGTAAATCCTGGGTTTGGTGGGCAGAGCTTTATTGAGAGCCAAGTAAAGAAAATCTCAGACTTGAGAAGAATATGTGCAGAGAAGGGAGTGAATCCATGGATTGAAGTGGATGGTGGGGTTGGCCCAGCAAATGCATACAAGGTTATTGAGGCTGGAGCCAATGCTTTAGTTGCGGGTTCTGCTGTTTTTGGAGCTAAAGACTATGCTGAAGCTATAAAAGGAATTAAAACCAGCAAGAGGCCTGTTGCAGTTGCAGTATGA 849 0.4311 MATASLGSSTLQSQINGFGVNKLQRSSLFQPTSFTFSRRKFSSTVKASARVDKFSKSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLIVGALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTINQIKSLGAKAGVVLNPATPLSTIEYVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRICAEKGVNPWIEVDGGVGPANAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKRPVAVAV* 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0634 282 PANTHER RIBULOSE-5-PHOSPHATE-3-EPIMERASE 59 274 IPR000056 GO:0005975|GO:0016857
Vvi17g0634 282 Gene3D Aldolase class I 49 278 IPR013785 -
Vvi17g0634 282 CDD RPE 60 272 IPR000056 GO:0005975|GO:0016857
Vvi17g0634 282 Pfam Ribulose-phosphate 3 epimerase family 61 259 IPR000056 GO:0005975|GO:0016857
Vvi17g0634 282 SUPERFAMILY Ribulose-phoshate binding barrel 53 275 IPR011060 -
Vvi17g0634 282 NCBIfam ribulose-phosphate 3-epimerase 61 272 IPR026019 GO:0004750|GO:0006098
Vvi17g0634 282 Hamap Ribulose-phosphate 3-epimerase [rpe]. 58 274 IPR026019 GO:0004750|GO:0006098
Vvi17g0634 282 FunFam Ribulose-phosphate 3-epimerase 56 278 - -
Vvi17g0634 282 ProSitePatterns Ribulose-phosphate 3-epimerase family signature 2. 192 214 IPR000056 GO:0005975|GO:0016857
Vvi17g0634 282 ProSitePatterns Ribulose-phosphate 3-epimerase family signature 1. 88 102 IPR000056 GO:0005975|GO:0016857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0634 Vvi-Chr17 7037958 7044127 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0634 K01783 - vvi:100267206 538.11