Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0628 ATGGATTATGCCTTGAGGGTTTTTGGAAAAATTGAAAACCCAGATGGGTTTCTTTGGAACACCATGATTAGGGGTTTAGGGAGGACAAGGCAACCGGAAAAGGCTTTTGAATTCTACAAGAGAATGCAGGTGAAAGGAGAGGTGTTGGACAATTTCACATACTCTTTCTTGGTGAAGGTTTGTGGGCAGTTGGGATCAGATCTGTTGGGGAAGCAGATCCACTGTAATGTACTGAAGCATGGACTTGAAGAACATGTCTTTGTGAGGAACACTCTCGTTCACATGTACGGCATGTTTAAAGACATCGAAGCTGCAACCCACTTGTTTGAAGAAATGCCCAAATCATACTTAGTAGCTTGGAACACTATCATTGACTGCAATGTCTATTGTGGACGCTACAAAGAAGCTATTGAGCTGTTCTTTCGAATGCTGCAAAGTGGCCTCAAACCTGATGACGCCACGTTTGTTGTGACCCTTTCAGCCTGTGCTGCGTTGGGTGAACTGGATATTGGGAGGCGGGTCCATTCTTGTATTGATCACACTGGCCTTGGCAATGTTGTTTCTGTCTCTAATTCACTGATTGACATGTATGCAAAGTGTGGAGTAGTTGAAGCAGCATACGAGATATTTAATAAGATGAAGGGGAGGAACATAGTGTCATGGAATACGATGATTCTTGGGTTGGCAATGCATGGCCATGGGGATGAGGCGTTGGAACTCTTCTCAAAAATGTTGGAAGAAAAGCTTGCAACACCTAATGAAGTTACTTTCTTGGGAGTTCTATGTGCCTGTAGCCACGGAGGAATGGTTGAAGAAGGAAGAAGATATTTTGATATTATGAGGAGAGACTACAACATCCAACCCACAATAAAGCACTATGGAAGCATGGTGGATATTCTGGGCCGAGCTGGGCTTGTGGAGGAGGCTTACCGATTGATAAAGAGCATGCCCATAGAGAGCAATTCCATTGTATGGAGGACATTGTTGGCTGCGTGTCGGGTGCATGGAAATCTTGAACTTGCAGAGCAAGTGAGACAGCAACTTTTGGAGTTAGAACCAGATCACAGCAGTGATTACGTCCTTCTCGCAAACATGTATGCAAGCGCAGGGCAATGGAACAAAGTGGTGAGAGTGAGAAAATCAATGCATATCAGGGGAGTTCAGAAACCAAAGCCTGGTAATAGCTACATTGGCTTTCAACCTAGTATGAGGTTAGAGATGGAGTCAACTGAAGCTTCCTGTGTCCATTGA 1251 0.4436 MDYALRVFGKIENPDGFLWNTMIRGLGRTRQPEKAFEFYKRMQVKGEVLDNFTYSFLVKVCGQLGSDLLGKQIHCNVLKHGLEEHVFVRNTLVHMYGMFKDIEAATHLFEEMPKSYLVAWNTIIDCNVYCGRYKEAIELFFRMLQSGLKPDDATFVVTLSACAALGELDIGRRVHSCIDHTGLGNVVSVSNSLIDMYAKCGVVEAAYEIFNKMKGRNIVSWNTMILGLAMHGHGDEALELFSKMLEEKLATPNEVTFLGVLCACSHGGMVEEGRRYFDIMRRDYNIQPTIKHYGSMVDILGRAGLVEEAYRLIKSMPIESNSIVWRTLLAACRVHGNLELAEQVRQQLLELEPDHSSDYVLLANMYASAGQWNKVVRVRKSMHIRGVQKPKPGNSYIGFQPSMRLEMESTEASCVH* 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0628 416 Pfam PPR repeat family 118 163 IPR002885 -
Vvi17g0628 416 Pfam PPR repeat family 216 264 IPR002885 -
Vvi17g0628 416 Pfam PPR repeat family 14 61 IPR002885 -
Vvi17g0628 416 FunFam Uncharacterized protein 72 171 - -
Vvi17g0628 416 Gene3D Tetratricopeptide repeat domain 72 171 IPR011990 GO:0005515
Vvi17g0628 416 NCBIfam pentatricopeptide repeat 18 50 IPR002885 -
Vvi17g0628 416 NCBIfam pentatricopeptide repeat 118 151 IPR002885 -
Vvi17g0628 416 NCBIfam pentatricopeptide repeat 255 289 IPR002885 -
Vvi17g0628 416 NCBIfam pentatricopeptide repeat 219 250 IPR002885 -
Vvi17g0628 416 NCBIfam pentatricopeptide repeat 191 219 IPR002885 -
Vvi17g0628 416 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 117 398 IPR046960 GO:0003723|GO:0009451
Vvi17g0628 416 Gene3D Tetratricopeptide repeat domain 250 400 IPR011990 GO:0005515
Vvi17g0628 416 Gene3D Tetratricopeptide repeat domain 172 249 IPR011990 GO:0005515
Vvi17g0628 416 Gene3D Tetratricopeptide repeat domain 1 69 IPR011990 GO:0005515
Vvi17g0628 416 FunFam Pentatricopeptide repeat-containing protein 190 400 - -
Vvi17g0628 416 Pfam E motif 335 397 IPR046848 -
Vvi17g0628 416 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 217 251 IPR002885 -
Vvi17g0628 416 Pfam PPR repeat 90 115 IPR002885 -
Vvi17g0628 416 Pfam PPR repeat 293 316 IPR002885 -
Vvi17g0628 416 SUPERFAMILY TPR-like 99 375 IPR011990 GO:0005515
Vvi17g0628 416 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 116 150 IPR002885 -
Vvi17g0628 416 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 15 49 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0628 Vvi-Chr17 6971152 6972402 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0628 1 397 Glycoside Hydrolase AT3G49170 36.591 1.06e-87 282
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0628 - - vvi:104882308 848.58