Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0621 ATGGAGAAGACGACTCTTTTTCACTGCCTTATCAAGAAGATGACAGTGGGGAACAAGACCAACCCCATGTTGTTTCTCTCCATCCTATTGTTTCTCGTTGCTCTCGACTGGTTCATTACATTTTTAGACTTTTGTTTAAGCGTTCGGGACTTGCTTCAAACCTGTATTGCCTTCATTTCCAGGGCACGGGGAGCCTGTGCTGGTTGCAGCAGCAGCTCCAGCTTACAGCCTAATGAAAATGCGGATGATGATGATGATGGTGAACTGCTGGCGAGAGGAGATTTAGAAATGGTGATGGAGAAGCTGGGATTTCACTGTGACCCAGATGAGGAACTGGGCTCAAGTCAGTTTGCTCTGCTGTTTGAGGAAGAGCCCAGTATTGGGGAAGTGAAGGAAGCATTTCAAGTTTTTGATGAGAACAGGGATGGATATGTTGATGCAGGGGAGTTGAATAAAGTCCTTCGTACACTGGGGTTTGTGCTAGCTTCTGAGGTGGAATGCGAGAAAATGATTCAAGCTTTTGATGATGATGGAGATGGCAGAATAGACTTCGATGAATTCACGAAACTCGTGGAGAAGAGTTTCTGCTAA 591 0.4552 MEKTTLFHCLIKKMTVGNKTNPMLFLSILLFLVALDWFITFLDFCLSVRDLLQTCIAFISRARGACAGCSSSSSLQPNENADDDDDGELLARGDLEMVMEKLGFHCDPDEELGSSQFALLFEEEPSIGEVKEAFQVFDENRDGYVDAGELNKVLRTLGFVLASEVECEKMIQAFDDDGDGRIDFDEFTKLVEKSFC* 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0621 196 ProSitePatterns EF-hand calcium-binding domain. 175 187 IPR018247 -
Vvi17g0621 196 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 82 193 - -
Vvi17g0621 196 Pfam EF-hand domain pair 130 191 IPR002048 GO:0005509
Vvi17g0621 196 SMART efh_1 129 157 IPR002048 GO:0005509
Vvi17g0621 196 SMART efh_1 166 194 IPR002048 GO:0005509
Vvi17g0621 196 SUPERFAMILY EF-hand 83 191 IPR011992 -
Vvi17g0621 196 Gene3D - 114 195 - -
Vvi17g0621 196 ProSiteProfiles EF-hand calcium-binding domain profile. 162 196 IPR002048 GO:0005509
Vvi17g0621 196 CDD EFh 129 191 IPR002048 GO:0005509
Vvi17g0621 196 PRINTS Parvalbumin signature 116 134 - -
Vvi17g0621 196 PRINTS Parvalbumin signature 174 187 - -
Vvi17g0621 196 PRINTS Parvalbumin signature 138 154 - -
Vvi17g0621 196 ProSiteProfiles EF-hand calcium-binding domain profile. 125 160 IPR002048 GO:0005509
Vvi17g0621 196 FunFam Calmodulin-2 A 119 195 - -
Vvi17g0621 196 ProSitePatterns EF-hand calcium-binding domain. 138 150 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0621 Vvi-Chr17 6864120 6864710 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0621 73 196 EF-hand Containing Proteins AT5G39670 48.092 1.47e-29 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0621 K02183 - vri:117904105 356.295