Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0617 ATGAAGTTGACGGTGGCATGGACAATTATGGTTACGACCCTCTTAGGGGTAGCCATGGATGGATACGACTGCAAGGTCGTGCAGTTCATCTTTGGTGACTCCCTCTCAGACGTCGGGAACAATGACCGCCTCAGCAAGAGCCTTGCTCAAGCAAGCCTTCCATGGTATGGTATTGATTTCGGTAATGGCTTGCCAAACGGGAGGTTCTGTAATGGACGCACTGTTGCTGATATAATAGGTGATAGGACAGGTCTCCCAAGACCACCAGCTTTTCTCGATCCATCTTTAACAGAAGACATGATACTGGAAAATGGAGTGAACTATGCCTCTGGAGGTGGTGGGATTTTGAATGAAACCGGCAGCCTCTTTATTGGGTTGTTTCAAGGAACACAAGAGCTGATAAAAGCCAAAATTGGCAAAGAAGCAGCAGAAAATTTCTTTCAAAAATCACGGTATGTTGTTGCTTTAGGAAGCAATGACTTCATTAACAATTACTTGCTACCAGTTTACAATGATGGATGGAAGTACTCAGACGAGGGATTCATAAACTACTTAATGGAAACCCTTAAAGCACAGCTCACGATATTGCACGGCTTGGGAGCGCGAGAGCTGATGGTGTTTGGATTGGGTCCCATGGGTTGTATCCCGCTTCAAAGGGTCTTAAGCACATCTGGGGAGTGCCAGGACAAAACAAACAAACTAGCTCTCAGCTTCAATCAAGCTGGAAGTAAGATGCTGAAAGAGTTGTCAGGCAACCTTCCTAATGCCAGCTTCAAATTTGGAGATGCTTATGATGTCGTCGATGCTGTGATAACCAATCCACAAAAATATGGATTCAATAATTCAGACTCCCCCTGTTGCTCATTTGGGAAGATCCGACCTGCTCTTACATGTGTCCCTGCATCGATTTTGTGTGAAGATAGAAGCAAGTATGTGTTTTGGGATGAGTATCACCCATCAGATAGTGCTAATGAGCTTATTGCAACTGAGCTCATCAGAAAATTCGGATTTTTGCCCGTCAATGAAACAAATGCTCCTTCCCCAGGGCCAACAGTTGATGCTCCTTCCCCAGGGCTAGCAGTTGATGCTCCTTCCCCAGGGCTAGCAGTTGCTCCATCTCCAGAAGGATAA 1131 0.4553 MKLTVAWTIMVTTLLGVAMDGYDCKVVQFIFGDSLSDVGNNDRLSKSLAQASLPWYGIDFGNGLPNGRFCNGRTVADIIGDRTGLPRPPAFLDPSLTEDMILENGVNYASGGGGILNETGSLFIGLFQGTQELIKAKIGKEAAENFFQKSRYVVALGSNDFINNYLLPVYNDGWKYSDEGFINYLMETLKAQLTILHGLGARELMVFGLGPMGCIPLQRVLSTSGECQDKTNKLALSFNQAGSKMLKELSGNLPNASFKFGDAYDVVDAVITNPQKYGFNNSDSPCCSFGKIRPALTCVPASILCEDRSKYVFWDEYHPSDSANELIATELIRKFGFLPVNETNAPSPGPTVDAPSPGLAVDAPSPGLAVAPSPEG* 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0617 376 MobiDBLite consensus disorder prediction 344 376 - -
Vvi17g0617 376 SUPERFAMILY SGNH hydrolase 30 334 - -
Vvi17g0617 376 CDD SGNH_plant_lipase_like 29 334 IPR035669 -
Vvi17g0617 376 Gene3D SGNH hydrolase 27 335 IPR036514 -
Vvi17g0617 376 PANTHER GDSL LIPASE/ACYLHYDROLASE FAMILY PROTEIN (AFU_ORTHOLOGUE AFUA_4G14700) 28 334 - -
Vvi17g0617 376 Pfam GDSL-like Lipase/Acylhydrolase 29 329 IPR001087 GO:0016788
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0617 Vvi-Chr17 6825995 6827595 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0617 29 328 Acyl Lipid Metabolism Gene Families AT4G10950 33.974 5.44e-59 194
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0617 - - vvi:100248401 761.525