Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0616 ATGGCCAATCTCAACCCTCAATCCTTCCAAATCCGACGGTCTTCACCCCCCTCATATCCCAAACCATATCACCAATTATGTACTTATTCATCTCCTTCACTTTCCTCCTCCTCCACTGCCCGCCCAACTATGGCCTCCATTTCCCTCAAAACCTTCGTCGGACTCCGTCAGTCCTCATCGGACACTTACAATTCCGGCCATGTTTTCCCCGTCAAGCATCTTCCTGCTCAACCCGCTTCCCGGGGTCTCCGCATTGTTGCTGGTAAGTTCAGCCCCAAGGTCACTGGCCGGAATCTTAGAGTCGCTGTCGTCGGAGGTGGTCCGGCCGGAGGGTCTGCTGCTGAGACACTGGCCAAGGGCGGCATCGAGACGTTCTTGATAGAGCGGAAGCTCGACAACTGCAAGCCTTGTGGCGGCGCCATACCTCTGTGCATGGTCGGAGAGTTCGATCTTCCTTTGGACATCATCGACCGGCGTGTCACCAAGATGAAGATGATCTCTCCCTCGAATGTCGCCGTCGACATCGGCCAAACGTTGAAGCCCCACGAGTACATCGGAATGGTTCGCCGCGAAGTCCTCGATTCCTATCTGCGGGAGCGTGCTTCCGCCTCCGGAGCCACCGTCATCAACGGTCTCTTCCTTAAGATGGACGCCCCCAAAGGCGCCACCGCCCCTTACGTCCTCCACTACACCGGCTACGACAGCAAGACCGGTGGAGTGGGCGAGCGGCGCACGTTGGAGGTGGACGCCGTCATCGGCGCTGACGGTGCCAACTCGCGGGTGGCGAAGTTCATCGGCGCCGGTGATTACGACTACGCGATTGCCTTTCAGGAGAGAATTAAAATCCCGGACGACAAAATGGTGTACTACGAGAATTTGGCTGAAATGTACGTCGGTGACGACGTGTCGCCGGACTTTTACGGGTGGGTGTTCCCGAAATGCGACCACGTAGCCGTAGGCACCGGCACGGTGACCCACAAATCAGACATTAAGAAGTTTCAGCTAGCTACTCGGCTAAGAGCCAAGGAGAAGATACTGGGTGGAAAGATCATCCGTGTGGAGGCCCACCCTATTCCTGAACACCCTCGCCCTCGCAGGTTAGCGGGGAGAGTTGCTCTGGTGGGAGATGCAGCAGGGTATGTCACCAAATGCTCCGGTGAAGGTATCTACTTTGCAGCAAAGAGTGGTAGAATGTGTGCAGAGGCGATAGTGGAGGGGTCAGAGAATGGGAAGAGGATGGTGGACGAGGGAGACCTAAGGAAGTATTTGGAGAAGTGGGATAAAACCTATTGGCCAACTTACAAGGTGTTGGATGTGCTGCAAAAGGTGTTCTATCGATCAAATCCAGCCAGGGAGGCCTTTGTGGAGATGTGCGCGGATGAGTATGTGCAGAAGATGACCTTTGACAGCTATTTGTATAAGAAGGTGGTACCCGGGAACCCATTGGAGGATTTGAAGCTGGCTGTGAATACTATCGGGAGCTTGGTGAGGGCCAATGCTCTTAGGAGGGAGATGGATAAGATGAGCGTATGA 1533 0.5486 MANLNPQSFQIRRSSPPSYPKPYHQLCTYSSPSLSSSSTARPTMASISLKTFVGLRQSSSDTYNSGHVFPVKHLPAQPASRGLRIVAGKFSPKVTGRNLRVAVVGGGPAGGSAAETLAKGGIETFLIERKLDNCKPCGGAIPLCMVGEFDLPLDIIDRRVTKMKMISPSNVAVDIGQTLKPHEYIGMVRREVLDSYLRERASASGATVINGLFLKMDAPKGATAPYVLHYTGYDSKTGGVGERRTLEVDAVIGADGANSRVAKFIGAGDYDYAIAFQERIKIPDDKMVYYENLAEMYVGDDVSPDFYGWVFPKCDHVAVGTGTVTHKSDIKKFQLATRLRAKEKILGGKIIRVEAHPIPEHPRPRRLAGRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVEGSENGKRMVDEGDLRKYLEKWDKTYWPTYKVLDVLQKVFYRSNPAREAFVEMCADEYVQKMTFDSYLYKKVVPGNPLEDLKLAVNTIGSLVRANALRREMDKMSV* 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0616 510 MobiDBLite consensus disorder prediction 1 15 - -
Vvi17g0616 510 FunFam Geranylgeranyl diphosphate reductase 98 505 - -
Vvi17g0616 510 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 247 262 - -
Vvi17g0616 510 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 368 383 - -
Vvi17g0616 510 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 100 122 - -
Vvi17g0616 510 NCBIfam geranylgeranyl reductase family protein 101 403 IPR011777 GO:0016628
Vvi17g0616 510 NCBIfam geranylgeranyl reductase 99 497 IPR011774 GO:0045550
Vvi17g0616 510 MobiDBLite consensus disorder prediction 1 23 - -
Vvi17g0616 510 NCBIfam geranylgeranyl diphosphate reductase 100 497 IPR010253 GO:0015979|GO:0015995|GO:0045550
Vvi17g0616 510 PANTHER GERANYLGERANYL DIPHOSPHATE REDUCTASE 97 503 - -
Vvi17g0616 510 Pfam FAD binding domain 100 130 IPR002938 GO:0071949
Vvi17g0616 510 SUPERFAMILY FAD/NAD(P)-binding domain 99 476 IPR036188 -
Vvi17g0616 510 Gene3D - 99 509 IPR036188 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0616 Vvi-Chr17 6820861 6822637 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0616 K10960 - vvi:100243277 931.398