Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0615 ATGGCAGCAACATCGTTGACTACAATTACAATCGGATCATCTGCCTCAATTGGCTCAAAAGCAATCCCACTTTCACGGTCAAAGTGTTTTGGTGTGTCATTCAACTCTCAGAACTATCTTAAGAGTTTCAGTGGCCTCAAGGCAGCATCTTCAATCAGCTGTGAATCAGAGGCATCCTTCTTAGGCAAGGAAAGTAGTGCAGCTCTTCGGAACTCTTTTGCACCAAAAGCTGGAAAGCAAAACCTGAGGCATCAGTACTACCTACAGCCCCAGGCCTCATCGTCCAAAGTGGCAATTCTTGGAGCTGCTGGAGGGATAGGTCAGCCCCTAGCACTCCTAATCAAGATGTCCCCATTAGTTTCTGCACTTCACCTTTATGATATAGCAAATGTTAAGGGAGTTGCTGCTGATCTCAGTCACTGCAATACTCCTGCTCAAGTGCTGGACTTTACAGGAACTTCTGAATTAGCCAATTCTTTGAAAGGTGTGGACGTGGTTGTTATACCTGCAGGAGTTCCGAGAAAGCCAGGTATGACCCGTGATGACCTCTTCAACATCAATGCCAACATAGTGAAGACCTTGGTTGAGGCTGTTGCTGACAACTGCCCTGATGCCTTCATCCATATTATCAGCAATCCAGTTAATTCTACAGTGCCCATCGCTGTGGAAGTTTTGAGGCGGAAGGGTGTCTATGATCCAAAGAAGGTTTTTGGTGTTACTACACTGGATGTTGTGAGGGCAAACACATTTGTTGCTCAGAAGAAGAACCTTAGGCTCATTGATGTAGATGTCCCTGTTGTTGGGGGACATGCTGGGATAACTATTCTGCCCCTGCTGTCAAGGACAAAGCCCTCAGTAAGTTTCACTGATGAAGAAGTGGAAGAACTAACTGTTAGAATCCAAAATGCTGGAACAGAAGTTGTGGAGGCAAAGGCAGGAGCAGGGTCTGCTACACTGTCAATGGCATATGCAGCAGCAAGATTCGTTGAGTCATCCCTCCGTGCACTGGATGGGGACACGGATGTCTATGAGTGCGCCTATGTACAGTCGGAGCTGACTGAGCTTCCTTTCTTTGCCTCAAGGGTTAAGATTGGAAAGAAAGGGATTGAAGCCGTGATTTCTAGTGACCTCCAAGGATTGACTGAGTATGAAGAGAAGGCTTTGGAAGCCCTCAAGCCAGAACTGAAGGCCAGTATTGAGAAGGGGGTGGCTTTTGCACAAAAGCAAACAGTGACAGCTTAA 1242 0.467 MAATSLTTITIGSSASIGSKAIPLSRSKCFGVSFNSQNYLKSFSGLKAASSISCESEASFLGKESSAALRNSFAPKAGKQNLRHQYYLQPQASSSKVAILGAAGGIGQPLALLIKMSPLVSALHLYDIANVKGVAADLSHCNTPAQVLDFTGTSELANSLKGVDVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIAVEVLRRKGVYDPKKVFGVTTLDVVRANTFVAQKKNLRLIDVDVPVVGGHAGITILPLLSRTKPSVSFTDEEVEELTVRIQNAGTEVVEAKAGAGSATLSMAYAAARFVESSLRALDGDTDVYECAYVQSELTELPFFASRVKIGKKGIEAVISSDLQGLTEYEEKALEALKPELKASIEKGVAFAQKQTVTA* 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0615 413 Gene3D - 92 239 - -
Vvi17g0615 413 FunFam Malate dehydrogenase 93 239 - -
Vvi17g0615 413 CDD MDH_glyoxysomal_mitochondrial 96 406 IPR010097 GO:0006099|GO:0030060
Vvi17g0615 413 SUPERFAMILY LDH C-terminal domain-like 239 406 IPR015955 GO:0003824|GO:0016616
Vvi17g0615 413 FunFam Malate dehydrogenase 240 408 - -
Vvi17g0615 413 ProSitePatterns Malate dehydrogenase active site signature. 239 251 IPR001252 GO:0006108|GO:0016615
Vvi17g0615 413 Pfam lactate/malate dehydrogenase, NAD binding domain 96 238 IPR001236 GO:0016491
Vvi17g0615 413 NCBIfam malate dehydrogenase 96 407 IPR010097 GO:0006099|GO:0030060
Vvi17g0615 413 Gene3D - 240 411 IPR015955 GO:0003824|GO:0016616
Vvi17g0615 413 PANTHER MALATE AND LACTATE DEHYDROGENASE 80 409 - -
Vvi17g0615 413 Pfam lactate/malate dehydrogenase, alpha/beta C-terminal domain 240 405 IPR022383 GO:0016616
Vvi17g0615 413 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 87 239 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0615 Vvi-Chr17 6803865 6805106 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0615 K00026 - vvi:100265585 766.148