Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0614 ATGACTACCATTTCACGGATCTTTCGCTCAGGTCGCCCCTCTCTCTCTGACTCCACTCCCGGTCGTTATCTTTCCACTTCTGCCTTCTCCACAGCATCTCTCCCTTTCCTTGACTCAGAGGAGAGTCCATCAACAGCATCCGAGAACCATCGACGACTGCAGCACCAAACACATCCCCTTCCAAAGTCACGAGATGAAAGCGAGAACCAACTTATTTCTCTCATTAAATCCTGTTCCAAGAAGACCCATTTGCTTCAAATTCACGCCCACATCATCCGTACATCTCTCATACAAAACCACTTCATCTCTTTGCAGTTTCTGTCTCGGGCGGCGCTCTCGCCATCGCGTGACATGGGCTATTCCTCCCAAGTTTTCTCTCAGATCATGAAGCCTTCTGGGTCTCAATACAATGTCATGATCAGAGCTTACTCTATGAGCCATTCGCCTGAGCAGGGGTTTTATCTGTACCGGGAAATGCGACGGCGAGGTGTTCCTCCAAACCCCTTGTCGTCTTCATTCGTTATGAAGTCTTGTATCAGAATTTCTTCGTTAATGGGTGGATTGCAGATTCATGCTAGGATTTTGAGAGATGGGCATCAATCTGATAATCTTTTGCTCACTACTTTGATGGACTTGTATTCATGCTGTGATAAGTTTGAAGAAGCATGCAAGGTGTTTGATGAGATACCTCAGTGGGACACCGTTTCATGGAATGTATTGATTTCTTGCTGCATTCACAATAGGCGGACCCGGGATGCTCTGAGAATGTTTGATATTATGCAGAGCACAGCGGATGGGTTTGAACCGGATGATGTTACTTGCTTGCTTCTCCTTCAAGCTTGTGCTAACTTGGGTGCATTAGAGTTCGGTGAACGGGTTCATAATTATATTGAAGAACATGGATATGATGGTGCTCTCAATTTGTGTAATTCTCTTATAACAATGTACTCACGATGTGGACGATTGGAGAAGGCTTATTCTATCTTCAAGAGGATGGATGAGAGGAATGTAGTTTCATGGAGTGCAATGATTTCTGGTTTTGCTATGCATGGATACGGTAGAGAGGCGATTGAAGCTTTTGAACAGATGCAGCAGTTGGGTGTATCTCCTGATGATCAAACTCTAACAGGGGTTCTTTCTGCTTGTAGTCACTGTGGGTTGGTTGATGACGGCCTGATGTTTTTCGATCGGATGAGCAAAGTGTTTGGCATAGAGCCTAATATCCACCATTATGGGTGTATGGTTGATCTCTTGGGTCGTGCTGGTTTGCTCGATCAGGCCTACCAGCTTATAATGTCAATGGTGATTAAACCAGATTCAACATTATGGAGGACTTTACTTGGGGCTTGCAGAATTCATCGACACGCCACCCTTGGAGAACGAGTAATTGGACATTTGATTGAACTCAAGGCTCAAGAAGCCGGGGATTATGTTCTGTTGTTGAATATTTATTCTTCAGTTGGTAACTGGGATAAGGTGACAGACTTGAGAAAGTTTATGAAGGAGAAAGGAATTCAAACATCACCTGGCTGTAGTACAATTGAACTGAAGGGAAAAGTGCATGAGTTTGTGGTGGATGATATTTTACATCCTCGGACTGATGAAATTTATGAGATGCTGGATGAGATTGGAAAGCAACTGAAGATTGCTGGTTATGTTGCTGAATTATCATCGGAATTGCACAATTTGGGTGCTGAAGAAAAGGGAAATAGGTTGTCCTATCATAGTGAGAAGTTGGCCATTGCTTTTGGAGTCCTTGCAACTCCACCAGGCACGACAATTAGGGTGGCCAAGAACCTGCGAATCTGTGTTGACTGTCACAATTTTGCAAAGGTCCTTTCAGGGGCTTATAATCGTGAGGTGGTTATAAGAGATCGCACACGGTTTCATCATTTCCGAGAAGGGCAGTGCTCTTGCAATGGCTACTGGTAG 1932 0.4441 MTTISRIFRSGRPSLSDSTPGRYLSTSAFSTASLPFLDSEESPSTASENHRRLQHQTHPLPKSRDESENQLISLIKSCSKKTHLLQIHAHIIRTSLIQNHFISLQFLSRAALSPSRDMGYSSQVFSQIMKPSGSQYNVMIRAYSMSHSPEQGFYLYREMRRRGVPPNPLSSSFVMKSCIRISSLMGGLQIHARILRDGHQSDNLLLTTLMDLYSCCDKFEEACKVFDEIPQWDTVSWNVLISCCIHNRRTRDALRMFDIMQSTADGFEPDDVTCLLLLQACANLGALEFGERVHNYIEEHGYDGALNLCNSLITMYSRCGRLEKAYSIFKRMDERNVVSWSAMISGFAMHGYGREAIEAFEQMQQLGVSPDDQTLTGVLSACSHCGLVDDGLMFFDRMSKVFGIEPNIHHYGCMVDLLGRAGLLDQAYQLIMSMVIKPDSTLWRTLLGACRIHRHATLGERVIGHLIELKAQEAGDYVLLLNIYSSVGNWDKVTDLRKFMKEKGIQTSPGCSTIELKGKVHEFVVDDILHPRTDEIYEMLDEIGKQLKIAGYVAELSSELHNLGAEEKGNRLSYHSEKLAIAFGVLATPPGTTIRVAKNLRICVDCHNFAKVLSGAYNREVVIRDRTRFHHFREGQCSCNGYW* 644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0614 643 FunFam Pentatricopeptide repeat-containing protein At3g47530 400 579 - -
Vvi17g0614 643 MobiDBLite consensus disorder prediction 1 20 - -
Vvi17g0614 643 Pfam PPR repeat family 233 283 IPR002885 -
Vvi17g0614 643 Pfam PPR repeat family 136 178 IPR002885 -
Vvi17g0614 643 Pfam PPR repeat family 335 383 IPR002885 -
Vvi17g0614 643 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 336 370 IPR002885 -
Vvi17g0614 643 Pfam DYW family of nucleic acid deaminases 551 643 IPR032867 GO:0008270
Vvi17g0614 643 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 305 335 IPR002885 -
Vvi17g0614 643 NCBIfam pentatricopeptide repeat 136 167 IPR002885 -
Vvi17g0614 643 NCBIfam pentatricopeptide repeat 374 408 IPR002885 -
Vvi17g0614 643 NCBIfam pentatricopeptide repeat 308 338 IPR002885 -
Vvi17g0614 643 NCBIfam pentatricopeptide repeat 235 270 IPR002885 -
Vvi17g0614 643 NCBIfam pentatricopeptide repeat 338 371 IPR002885 -
Vvi17g0614 643 Pfam E motif 457 515 IPR046848 -
Vvi17g0614 643 Pfam PPR repeat 207 230 IPR002885 -
Vvi17g0614 643 Pfam PPR repeat 410 435 IPR002885 -
Vvi17g0614 643 FunFam Pentatricopeptide repeat-containing protein mitochondrial 289 399 - -
Vvi17g0614 643 MobiDBLite consensus disorder prediction 37 67 - -
Vvi17g0614 643 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 233 263 IPR002885 -
Vvi17g0614 643 FunFam Pentatricopeptide repeat-containing protein chloroplastic 186 288 - -
Vvi17g0614 643 Gene3D Tetratricopeptide repeat domain 132 300 IPR011990 GO:0005515
Vvi17g0614 643 Gene3D Tetratricopeptide repeat domain 396 575 IPR011990 GO:0005515
Vvi17g0614 643 MobiDBLite consensus disorder prediction 44 65 - -
Vvi17g0614 643 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 233 580 IPR046960 GO:0003723|GO:0009451
Vvi17g0614 643 Gene3D Tetratricopeptide repeat domain 301 395 IPR011990 GO:0005515
Vvi17g0614 643 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 132 166 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0614 Vvi-Chr17 6800771 6802702 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0614 71 643 Glycoside Hydrolase AT3G49170 35.739 4.38e-124 386
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0614 - - vvi:100258783 1306.2