Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0610 ATGTCTGAAAAGAGCATGCTACCCTCCAGGTTTCTTTTCTGCCTAATAACCATTTCCATGTTCCTTCTGATCCTTTCTTCTTTGTTCCTCCTTCAATTTAGCAATACTTCTTTCATACCCAATTCAGTTTTCAAGTTAATTCTTGTTAATAGCACATCAGTTTACTTCAAATCCAGTGGAAAAAATGAACAAACTAAGCTTCCTTTCGTTACTTCCGTAGCTTCACCTGTTGATAGTAAAAGACCCATGGGAAGAGAGGGGAGTTGTCAAATTTCCAATGCAAGCAAGAAAATGGATGCTTTAGGGCAAGGTAGAAGGAAGGGTTGTGACCCAAATCAAGCTCACCTTCGGGCATTTATGTATGACTTGCCTCCTGAATTTCATTTTGGATTATTGGGTTGGACAGGAAAGGCAAATCAGATATGGCCAAATGTTAGTAATCCAGGTCGAATCCCATCATATCCAGGTGGATTGAATTTACAGCACAGTATAGAGTATTGGCTAACCCTTGATCTTCTATCATCTGATACTCCGAATATAGTTAGACCTTGCAGTGCAATCAGAGTGAAGAATTCAAGTCAAGCAGATATAATCTTTGTGCCATTCTTTTCATCTCTGAGCTACAACAGGCATTCTAGGCTTCATGGAAAGGAAAAAGTTAGTGTTAACAAGATGTTGCAGGATAAATTGGTGAATTTTTTAATGGGTCAGGATGAATGGAAGCAATTGGGTGGGAAGAACCATCTAATTGTAGCTCACCATCCAAATAGCATGTTGGATGCAAGAAAGAAGCTAGGTTCTGCCATGTTTGTGCTTGCAGATTTTGGAAGGTACCCGGTTGAAATAGCAAATATTGACAAGGATGTGATCGCCCCTTACAAGCATGTTCTGAGGAGCAATCCTGTGGCAGATTCAGCCACATTTGAGGGGCGTCCCCTATTAGTGTATTTTCAAGGGGCAATTTATAGAAAAGATGGAGGAGCTATACGCCAGGAACTATATTATCTTCTCAGAGATGAGAAAGATGTACATTTCACGTTTGGTAGCGTTCGAGGGAATGGGATCAACGGTGCAAGTGAAGGGATGGCATCATCCAAATTCTGCTTGAATATTGCTGGAGACACCCCATCCTCAAATCGCCTCTTTGATGCCATTGTGAGCCATTGTGTTCCTGTCATAATAAGTGATGAAATTGAGCTACCATTTGAAGATGTTTTGGATTACTCTGAGTTCTGCATATTTGTCCGTGCATCTGATGCTGTAAAAAATGGGTTCCTACTGAATCTTCTTAGGGGAATCAAGAGAGAGAAGTGGACCAAAATGTGGGAGAGATTAAAGGAGATTGCTCACCACTTTGAATATCAATATCCATCTCAGGCAGGTGATGCTGTGGATATGATTTGGGGGGCAGTTTCACGCAAGATATCTTCAATTCAAAACAAACTCCACAGGAAGAATAGATACCGCAGATCTCAGATTCTGCTAAAGAGGAATTGA 1497 0.4081 MSEKSMLPSRFLFCLITISMFLLILSSLFLLQFSNTSFIPNSVFKLILVNSTSVYFKSSGKNEQTKLPFVTSVASPVDSKRPMGREGSCQISNASKKMDALGQGRRKGCDPNQAHLRAFMYDLPPEFHFGLLGWTGKANQIWPNVSNPGRIPSYPGGLNLQHSIEYWLTLDLLSSDTPNIVRPCSAIRVKNSSQADIIFVPFFSSLSYNRHSRLHGKEKVSVNKMLQDKLVNFLMGQDEWKQLGGKNHLIVAHHPNSMLDARKKLGSAMFVLADFGRYPVEIANIDKDVIAPYKHVLRSNPVADSATFEGRPLLVYFQGAIYRKDGGAIRQELYYLLRDEKDVHFTFGSVRGNGINGASEGMASSKFCLNIAGDTPSSNRLFDAIVSHCVPVIISDEIELPFEDVLDYSEFCIFVRASDAVKNGFLLNLLRGIKREKWTKMWERLKEIAHHFEYQYPSQAGDAVDMIWGAVSRKISSIQNKLHRKNRYRRSQILLKRN* 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0610 498 PANTHER EXOSTOSIN HEPARAN SULFATE GLYCOSYLTRANSFERASE -RELATED 16 468 IPR004263 GO:0006486|GO:0016757
Vvi17g0610 498 Pfam Exostosin family 115 428 IPR040911 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0610 Vvi-Chr17 6779689 6782317 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0610 - - vvi:100244988 981.859