Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0605 ATGAACCATACCCAACATCTCTGCAGTTCTTTGTTGACAAACTGTAGGAGCCTCAAGAACCTCAAGCAAGTCCACGCCTATGTATGCAAGACCGGCCTCGACACCGATCCCATCATCGCTGGAAAACTCCTCCTCCATTCCGCCGTCTCCGTCCCGGATGCGCTCGACTATGCTCGCCGCCTTTTCCTTCATTTTCCCAATCCAGATGTTTTCATGCACAATACCCTCATCCGAGGTCTCGCCGAGTCTGATACTCCACAAAACTCCCTCATTACATTCGTTGAAATGCGTCGCCGATTGACAGCGCCGCTTGATAGTTTTTCGTTTGCTTTCCTTCTCAAAGCGGCTGCGAGTTATCGGTCTCTGGAATCTGGGATTCAGTTGCATTGTCAAGCTATTGTGCATGGACTCGATACCCATCTCTTTGTTGGGACCACTCTTGTAAGTATGTACTCGGAATGCGGATTTGTCGCTTTTGCGAAGAAGGTGTTTGAGGAAATGTTTGAACCAAATGTTGTTGCTTGGAATGCGGTGGTTACTGCGTGTTTTAGGTGCGGAGATGTGAAGGGTGCAGATATGATGTTTAATAGAATGCCTTTTAGGAACTTGACCTCGTGGAATGTCATGCTTGCTGGGTACACCAAAGCTGGTGAGCTTGAGCTTGCGAGGAAATTGTTCTTGGAGATGCCCGTGAAGGATGATGTCTCGTGGAGTACTATGATTGTTGGGTTTGCTCATAATGGTTTTTTTTATGAGGCTTTTGGTTTTTTCAGGGAGTTGCAGCAGGTGGGAATGCGACCCAATGAGGTGAGCTTGACAGGGGCCCTTTCTGCATGTGCAGATGCTGGCGCAATCGAGTTTGGGAAGATCCTACATGGGTTTATAGAGAAATCTGGTTTTCTTTGGATGGTTTCTGTGAATAATGCACTCTTGGATACATATTCTAAATGCGGAAATGTGGGCATGGCTCGATTGGTTTTTGAGAGAATGCCAGAGAAAAGAAGTATTGTTTCATGGACTTCAATGATAGCAGGGCTTGCGATGCATGGATACGGTGAAGAAGCAATACAACTTTTCCATGAGATGGAGGAATCTGGGATAAGGCCTGACGGGATTGCCTTCATTTCCATTCTATATGCTTGTAGTCATGCTGGATTGATTGAAAAAGGGTATGAGTATTTTTATAAAATGAAGGACATATATAATATAGAACCAGCCATTGAGCATTATGGTTGTATGGTTGATCTGTATGGTCGTGCTGGTCAGCTAGATAAGGCTTATGAATTCATAATCCATATGCCTGTTTTGCCAACTGCCATTATTTGGAGGACACTTCTTGGGGCTTGCAGCATTCATGGAAATGTTAAATTGGCAGAGCGTGTAAAGGAAAGGCTTTCTGAGCTTGATCCCAACAACTCTGGTGACCATGTTCTGTTGTCAAATATATATGCAGTTGCAGGGAAATGGAAGGATGTTGCTGCTGTGAGAAGATCAATGACTGATCAGAGGATGAATAAAACCCCTGGTTGGAGCATGATTGAAGTTGACAAAATCATGTATAGTTTTGTGGCAGGTGAAGTACAGAATAGTATTACAGAAGAGGCTTATGAGAAGCTAAAAGAAATAATGTTGAAGCTTAGGGTTGAAGGGTGTTACATTCCAGAGGTTGGGAGTGTTTTACATGACATAGAAGACGAAGAAAAAGAAGATTCAGTTTCTAGGCACAGTGAGAAGCTTGCTGTTGCTTTTGGGATAGCAAGATTGTGCAAGGGAAGTATCATAAGAATAGTGAAGAACTTGAGGGTTTGCAGGGACTGTCATACTGTCATGAAACTGATATCTAAGGTGTATGGATTGGAGATTGTGGTGAGGGATAGAAGTCGGTTTCACTCCTTTAAAACTGGGTCTTGCTCCTGCAGAGATTACTGGTGA 1932 0.4394 MNHTQHLCSSLLTNCRSLKNLKQVHAYVCKTGLDTDPIIAGKLLLHSAVSVPDALDYARRLFLHFPNPDVFMHNTLIRGLAESDTPQNSLITFVEMRRRLTAPLDSFSFAFLLKAAASYRSLESGIQLHCQAIVHGLDTHLFVGTTLVSMYSECGFVAFAKKVFEEMFEPNVVAWNAVVTACFRCGDVKGADMMFNRMPFRNLTSWNVMLAGYTKAGELELARKLFLEMPVKDDVSWSTMIVGFAHNGFFYEAFGFFRELQQVGMRPNEVSLTGALSACADAGAIEFGKILHGFIEKSGFLWMVSVNNALLDTYSKCGNVGMARLVFERMPEKRSIVSWTSMIAGLAMHGYGEEAIQLFHEMEESGIRPDGIAFISILYACSHAGLIEKGYEYFYKMKDIYNIEPAIEHYGCMVDLYGRAGQLDKAYEFIIHMPVLPTAIIWRTLLGACSIHGNVKLAERVKERLSELDPNNSGDHVLLSNIYAVAGKWKDVAAVRRSMTDQRMNKTPGWSMIEVDKIMYSFVAGEVQNSITEEAYEKLKEIMLKLRVEGCYIPEVGSVLHDIEDEEKEDSVSRHSEKLAVAFGIARLCKGSIIRIVKNLRVCRDCHTVMKLISKVYGLEIVVRDRSRFHSFKTGSCSCRDYW* 644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0605 643 Pfam DYW family of nucleic acid deaminases 552 643 IPR032867 GO:0008270
Vvi17g0605 643 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 233 267 IPR002885 -
Vvi17g0605 643 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 8 580 IPR046960 GO:0003723|GO:0009451
Vvi17g0605 643 Pfam PPR repeat 308 333 IPR002885 -
Vvi17g0605 643 Pfam PPR repeat 205 230 IPR002885 -
Vvi17g0605 643 Pfam PPR repeat 173 200 IPR002885 -
Vvi17g0605 643 Pfam PPR repeat 235 264 IPR002885 -
Vvi17g0605 643 Pfam PPR repeat 409 433 IPR002885 -
Vvi17g0605 643 Pfam PPR repeat 145 169 IPR002885 -
Vvi17g0605 643 Pfam PPR repeat family 335 381 IPR002885 -
Vvi17g0605 643 FunFam Pentatricopeptide repeat-containing protein 102 201 - -
Vvi17g0605 643 FunFam Pentatricopeptide repeat-containing protein 202 292 - -
Vvi17g0605 643 NCBIfam pentatricopeptide repeat 337 370 IPR002885 -
Vvi17g0605 643 NCBIfam pentatricopeptide repeat 205 230 IPR002885 -
Vvi17g0605 643 NCBIfam pentatricopeptide repeat 235 269 IPR002885 -
Vvi17g0605 643 NCBIfam pentatricopeptide repeat 173 201 IPR002885 -
Vvi17g0605 643 Gene3D Tetratricopeptide repeat domain 293 400 IPR011990 GO:0005515
Vvi17g0605 643 Gene3D Tetratricopeptide repeat domain 88 201 IPR011990 GO:0005515
Vvi17g0605 643 Gene3D Tetratricopeptide repeat domain 202 292 IPR011990 GO:0005515
Vvi17g0605 643 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 335 369 IPR002885 -
Vvi17g0605 643 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 202 232 IPR002885 -
Vvi17g0605 643 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 171 201 IPR002885 -
Vvi17g0605 643 Pfam E motif 452 514 IPR046848 -
Vvi17g0605 643 Gene3D Tetratricopeptide repeat domain 401 576 IPR011990 GO:0005515
Vvi17g0605 643 FunFam Pentatricopeptide repeat-containing protein At2g34400 293 545 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0605 Vvi-Chr17 6737153 6739084 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0605 26 643 Glycoside Hydrolase AT3G49170 33.733 8.76e-120 375
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0605 - - vvi:100243404 1297.72