Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0604 ATGTTATTTCTTCTTATCTTAGTTAGCTTCACATTTACTAGCATTATGGCTGCCTGCGTGACCTTAGCATTTTTGAATTGTGGACAACAGATTCATGGGAGGATTATTCGAAGAGGCCTTGATGGGAATTTGGCCTTGTCTAATGCCCTTATAGACATGTATTCCAAATGTGGAAATATTGCTAATTCGCACCAAGTTTTTGGGGGTATGTCTCGTAGAGATTTGGTTTCTTGGACTACCATGATGATTGGGTATGAGACTCATGGGTATGGAGAAGAGGTTGTTGAATTGTTTGACAAAATGGTCAGGTCAGATATTAAGCCTGACTGA 330 0.397 MLFLLILVSFTFTSIMAACVTLAFLNCGQQIHGRIIRRGLDGNLALSNALIDMYSKCGNIANSHQVFGGMSRRDLVSWTTMMIGYETHGYGEEVVELFDKMVRSDIKPD* 110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0604 109 Gene3D Tetratricopeptide repeat domain 6 109 IPR011990 GO:0005515
Vvi17g0604 109 FunFam Pentatricopeptide repeat-containing protein 25 109 - -
Vvi17g0604 109 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 74 108 IPR002885 -
Vvi17g0604 109 NCBIfam pentatricopeptide repeat 76 109 IPR002885 -
Vvi17g0604 109 Pfam PPR repeat 48 74 IPR002885 -
Vvi17g0604 109 Pfam PPR repeat 76 106 IPR002885 -
Vvi17g0604 109 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 9 109 IPR046960 GO:0003723|GO:0009451
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0604 Vvi-Chr17 6708832 6709161 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0604 9 109 Glycoside Hydrolase AT3G49170 38.614 6.06e-25 95.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0604 - - vvi:100249409 193.741